theiameta output krona plots showing incorrect taxids

[kapsakcj]

🐛

📝 Describe the Issue

A user notified us that the krona plots produced by theiameta workflow show the incorrect NCBI taxon ID. When the user clicked on the taxon ID link, they would be brought to the an NCBI page taxonomy for a random or non-existent taxonomy page.

For example, user expected to see taxid 11292 Lyssavirus rabies, but instead the kronaplot shows 4621 which matches Thaumatococcus daniellii

kraken2report:

Upper left-hand side of krona plot here:

🔁 How to Reproduce

• Was this run on the Terra platform?
  • Terra on GCP or Azure? GCP
• Or were the workflows run locally using miniwdl or cromwell?
  • What was the exact command was used to launch the workflow?
• If possible, we may ask you to share your Terra workspace with us. Usually READER access is sufficient, but we may ask for WRITER access if we need to make changes to the workspace to reproduce the issue.

Run TheiaMeta on anything and view output krona plot.

🎣 Expected Behavior

link to the correct taxid

💾 Version Information

Noticed on TheiaMeta v2.0.0

ℹ️ Additional Information

I have email correspondence with the user if necessary to review

[AndrewLangvt]

This scope of work will be addressed alongside #278