v1.1.5

DO NOT USE - PLEASE UPGRADE

This release includes the following logic changes:

• the alternative_consequences section will be examined for all mutations originating in the mmpR5, mmpS5, and mmpL5 genes.
• the gene_associated_drugs section will be checked after the annotation field is examined to ensure that all drugs are accounted for, and if not, add the drugs to the laboratorian report based on the applicable expert rule.

v1.1.4

DO NOT USE - PLEASE UPGRADE

Final adjustments to LIMS lineage nomenclature.

v1.1.3

DO NOT USE - PLEASE UPGRADE

This release makes more changes to the LIMS lineage designation.

v1.1.2

DO NOT USE - PLEASE UPGRADE

This release fixes an issue in the language used in the LIMS report for lineage.

v1.1.1

DO NOT USE - PLEASE UPGRADE

This patch release fixes a bug when determining if certain mutations are in positions requiring extra consideration.

v1.1.0

DO NOT USE - PLEASE UPGRADE

This release fixes bugs and adds some more rules.

v1.0.0

DO NOT USE - PLEASE UPGRADE

tbp-parser v1.0.0

This is the first major release of the tbp-parser tool, which parses the JSON output of TBProfiler into four files: a laboratorian report, a LIMS report, a Looker report, and a coverage report. Please see the README.md for more details and information.