Pandas version conflict in creating environments

[ys-lim]

Thank you for this awesome pipeline.

I am running into issues while creating the R and python environments required to run the snakemake pipeline. In particular, I am getting the following package conflicts:

Error: pip failed to install packages
The conflict is caused by:
trvaep 0.1.0 depends on pandas
scib 1.1.4 depends on pandas>=2

Could you please advise how to resolve this? I have tried removing the pandas requirement in the .yml files to let pip try to resolve this package conflict, but it still does not work.

Thank you!

[lbl233]

Same issue. Have you solved that?

Thanks!

[1QiGuo]

Same issue.

Thanks!

[KarlKaise]

same problem.

Thank you

[Mehrr11]

same issue. Appreciate it if you could propose a solution as fast as possible as I urgently need to implement your great work. Thanks a lot. @LuckyMD @mumichae

The conflict is caused by:
trvaep 0.1.0 depends on pandas
scib 1.1.4 depends on pandas>=2

To fix this you could try to:

1. loosen the range of package versions you've specified
2. remove package versions to allow pip attempt to solve the dependency conflict

[Mehrr11]

You have given my comment a thumbs down!!! without saying anything!! That's not appropriate,@mk551619 if you don't understand what others in your team have develop, just be silent!
Many other people have the same issue and cannot replicate your work. I have just posted the error that I get during the installation and didn't suggest anything!!

[Darya-oveisi]

I have the same issue and could really use some help. Does anyone have a solution or workaround they've found effective? Any advice would be greatly appreciated!