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Issue on page /chromatin_accessibility/quality_control.html #288

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trev-f opened this issue Jul 25, 2024 · 0 comments
Open

Issue on page /chromatin_accessibility/quality_control.html #288

trev-f opened this issue Jul 25, 2024 · 0 comments
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@trev-f
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trev-f commented Jul 25, 2024

In section 24.4.2. Nucleosome Signal, changing the default number of fragments to count in ac.tl.nucleosome_signal with the n argument is discussed. The recommendation is to use n=10e3 * atac.n_obs instead of the default n=10e4 * atac.n_obs to speed up processing. However, the default is actually 1e4, not 10e4, and since 1e4 == 10e3, there is no reduction in processing time.

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