You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Basically, "Pick and check for collisions at random positions to place proteins on membranes" can work well, but there needs to be a way to handle more specific structures. For example, ATP synthases on cristae. The dimer's need to pinch the membrane, and essentially be centering over the main pinching region. I attempted this using the collision based alg., plus also only allowing it to use vertices based on a z threshold, to "push" them close to the front. What is awesome is that this actually kinda works, and gets a "natural" dimer arrangement, but the threshold is too individually specific, and it won't work on all cristaes with the same value. You can see here one cristae is good (albeit a little offset from center), while another has too many ATP synthases:
The text was updated successfully, but these errors were encountered:
Related to #26.
Basically, "Pick and check for collisions at random positions to place proteins on membranes" can work well, but there needs to be a way to handle more specific structures. For example, ATP synthases on cristae. The dimer's need to pinch the membrane, and essentially be centering over the main pinching region. I attempted this using the collision based alg., plus also only allowing it to use vertices based on a z threshold, to "push" them close to the front. What is awesome is that this actually kinda works, and gets a "natural" dimer arrangement, but the threshold is too individually specific, and it won't work on all cristaes with the same value. You can see here one cristae is good (albeit a little offset from center), while another has too many ATP synthases:
The text was updated successfully, but these errors were encountered: