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I want to run DAPC on a large SNP alignment so I first ran glPca on my fasta file. I then tried passing the PCA scores to find.clusters, and the resulting PCs v. variance explained plot is just a line? Is this what we would expect? And then how to select the number of retained PCs?
The text was updated successfully, but these errors were encountered:
I want to run DAPC on a large SNP alignment so I first ran glPca on my fasta file. I then tried passing the PCA scores to find.clusters, and the resulting PCs v. variance explained plot is just a line? Is this what we would expect? And then how to select the number of retained PCs?
The text was updated successfully, but these errors were encountered: