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Screeplot() function for sPCA is extremely slow. #349

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cms2775 opened this issue Mar 24, 2023 · 0 comments
Open

Screeplot() function for sPCA is extremely slow. #349

cms2775 opened this issue Mar 24, 2023 · 0 comments

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@cms2775
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cms2775 commented Mar 24, 2023

Hi,

I'm currently running the sPCA function in Adegenet with a very large dataset (aroud 120 samples and 40,000 SNPs). The spca function works fine and generates the correct output when run for about a day on our server. However, when I call the screeplot() function on my spca object, It appears to start the entire calculation over and ran for about a day before stalling. Is there an alternative?

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