README.md

PhD thesis supplementary files

mitochondria-length

mitochondria-length.ijm - an ImageJ script to extract mitochondria length from MitoTracker(R) images mitochondria-length.R - an R script to analyse mitochondria length data

mitochondria-width

mitochondria-width.ijm - an ImageJ script to extract mitochondria width from MitoTracker(R) images mitochondria-width.R - an R script to analyse mitochondria width data

text-fts-extract-pipeline.cpproj

CellProfiler 2.1.1 image analysis pipeline to extract texture features. Needs MeasurementTAS.py installed in the plugins folder

texture-features-PCA-clust.R

An R script to process extracted texture features