Nextflow pipeline for Conpair (concordance and contamination estimator)

Employ Nextflow to run parallel computational chemistry tasks

Nextflow wrapper for fastqc

Bacterial phenotype prediction from low pass sequencing using recommender systems and machine learning classifiers.

This repository contains the entire codebase necessary to pilot STAPLE, an automated end-to-end pipeline that processes Spatial Transcriptomics datasets.

Guidelines and subworkflows for Nextflow pipeline development in Sanger ToL

Example ML pipeline built with NextFlow.

Python package with helper tools for the nf-core community.

Microbiome analysis with QIIME2

Nextflow pipeline for analyzing iCLIP data.

Parallelization of Nextstrain builds and parameter testing using Nextflow

A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.

A Custom Variant Calling Pipeline for Dengue WGS (BWA + GATK + Lofreq) using nextflow and docker

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

Cloud based pipeline for parallelized iterative alignment of Hi-C data

rnaseq pipeline with nextflow

A directory structure to build a workspace for experiments.

Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R

Demonstrate problems with merging channels using a map as the key to merge by.