Datasets and analysis results released with the REVOLVER package for Cancer Evolution.

Personalized reference editor for somatic mutation discovery

a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow

This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ

a Nextflow ACE-Seq calling and annotation pipeline based on DKFZ-ODCF/ACEseqWorkflow

AI-based prediction of driver mutations

Detects hotspot regions for somatic mutations in 3D protein structures

This R package repository performs optimal transport and kernel regression hypothesis testing. Functions to perform large scale simulations are also provided.

Transposable Element Finder - Detection of active transposable elements from NGS data

An R package for mutation quality control of cancer genomic sequening dataset

R Shiny based lightweight mutation exploration tool

This repo contains an R package to execute ROKET's real data analysis workflow on TCGA cancer types

Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples

Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations

Depository for Bioinformatics Master Project HT2022-VT2023

Tumor-only variant calling

QBRC Somatic Mutation Calling Pipeline

Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)

Geno-DeBasher package for detection of germline and somatic variants