Tutorial 1. First steps Create a directory for PGPg_finder mkdir pgpg Enter in directory maked cd pgpg 1.1. Instalation Copy the archives for your computer git clone https://github.com/tpellegrinetti/PGPg_finder.git Enter in directory which copy from github cd PGPg_finder Install the PGPg_finder in your computer bash install.sh 2. Executing the PGPg for genomes General comand python PGPg_finder.py -w genome_wf -i input_directory -o output_directory -t threads Genomes example python PGPg_finder.py -w genome_wf -i genome_example/ -o genomeresult -t 22 The "-a" argument is optional and works if you want to provide assembly files Is not necessary create output folder before run the workflow 3. Executing the PGPg for metagenomes 3.1 greater accuracy General comand python PGPg_finder.py -w meta_wf -i input_directory -o output_directory -t threads