NAMESPACE

# Generated by roxygen2: do not edit by hand

useDynLib(wholebrain)

## import
importFrom(Rcpp, evalCpp)
import(png)
import(MASS)
import(grImport)
import(grid)
import(XML)
import(sp)
import(plyr)

## documented
export(find.dim)
export(get.grid.coordinates)
export(get.images)
export(get.pixel.intensity)
export(prune.spots)
export(remove.spot.outliers)
export(normalize.volume)
export(get.region.volume)
export(get.cortex.layer)
export(cortical.plot)
export(cortical.sideview)
export(cortical.topview)
export(draw.blobs)
export(get.probe.paths)

## undocumented
export(get.projection)
export(get.projection.strength)
export(get.region.from.coordinate)
export(update.wholebrain)
export(inside.blobs)
export(tracts3d)
export(lines.probe.paths)
export(paxTOallen)

export(conv)
export(showImage)
export(create.output.directory)
## export(imgSWT)
## export(createfilter)
## export(stackapply)
export(liftingscheme)
export(unstitch)
export(flat.field.correction)
export(laplacetest)

export(combine.st.data)

export(stitch)
export(stitch.animal)
export(stitch.experiment)
export(data.summary)
export(add.group)
export(spatial.transcriptomics)
export(invert.img)
export(get.range)

export(file_ext)
export(get.atlas.image)
export(acronym.from.id)
export(name.from.id)
export(id.from.acronym)
export(name.from.acronym)
export(get.sup.structure)
export(get.sub.structure)
export(get.acronym.parent)
export(get.acronym.child)
export(reflect.cells)
export(agg.datasets)

export(segment)
export(makewebmap)
export(printJSONneuron)
export(printJSONoutlines)
export(imshow)
export(get.vector.intensity)
export(imstats)

export(getWholeSection)
export(automatic.correspondences)
export(cpdNonrigid)
export(registration)
export(custom.registration)
export(update.regi)
export(testregistration)
export(get.contour)
export(nuclear.segment)

export(change.corrpoints)
export(add.corrpoints)
export(remove.corrpoints)
export(shift.corrpoints)

export(get.cell.ids)
export(acronym.from.id)
export(name.from.id)
export(get.forward.warp)
export(stereotactic.coordinates)
export(inspect.registration)
export(get.parts.of)
export(get.region)
export(bargraph)
export(dot.plot)
export(map.to.atlas)
export(get.forward.warpRCPP)
export(plot.registration)
export(roi.cell.count)
export(get.cortex.layer)

export(color.from.acronym)
export(color.from.id)
#export(export.rosettajson)
export(schematic.plot)
export(glassbrain)
export(get.cellcounts)
export(read.brains)
export(get.acronym.parent)
export(suggestions)
export(plot.suggestions)
export(plot.outlines)

export(rgb2gray)
export(morph)
export(mrd)
export(imflip)

export(make.atlas.nissl)
export(get.XML.info)
export(create.registration.plate)