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environment.yaml
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environment.yaml
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name: sc_tutorial
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.0=anacondar_1
- attrs=19.1.0=py37_1
- backcall=0.1.0=py37_0
- binutils_impl_linux-64=2.31.1=h6176602_1
- binutils_linux-64=2.31.1=h6176602_7
- bioconductor-rhdf5lib=1.6.0=r351h14c3975_0
- bleach=3.1.0=py37_0
- blosc=1.16.3=he1b5a44_1
- bwidget=1.9.11=1
- bzip2=1.0.6=h14c3975_1002
- ca-certificates=2019.5.15=0
- cairo=1.16.0=ha4e643d_1000
- certifi=2019.6.16=py37_1
- curl=7.64.1=hf8cf82a_0
- dbus=1.13.6=he372182_0
- decorator=4.4.0=py37_1
- defusedxml=0.6.0=py_0
- entrypoints=0.3=py37_0
- expat=2.2.5=hf484d3e_1002
- fontconfig=2.13.1=he4413a7_1000
- freetype=2.10.0=he983fc9_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_7
- gettext=0.19.8.1=hc5be6a0_1002
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_7
- glib=2.58.3=hf63aee3_1001
- gmp=6.1.2=hf484d3e_1000
- graphite2=1.3.13=hf484d3e_1000
- gsl=2.4=h294904e_1006
- gst-plugins-base=1.14.4=hdf3bae2_1001
- gstreamer=1.14.4=h66beb1c_1001
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_7
- h5py=2.9.0=nompi_py37hf008753_1102
- harfbuzz=2.4.0=h37c48d4_0
- hdf5=1.10.4=nompi_h3c11f04_1106
- icu=58.2=hf484d3e_1000
- igraph=0.7.1=h2166141_1005
- ipykernel=5.1.1=py37h39e3cac_0
- ipython=7.6.1=py37h39e3cac_0
- ipython_genutils=0.2.0=py37_0
- ipywidgets=7.4.2=py_0
- jedi=0.13.3=py37_0
- jinja2=2.10.1=py37_0
- jpeg=9c=h14c3975_1001
- json5=0.8.4=py_0
- jsonschema=3.0.1=py37_0
- jupyter=1.0.0=py_2
- jupyter_client=5.3.1=py_0
- jupyter_console=6.0.0=py_0
- jupyter_core=4.5.0=py_0
- jupyterlab=1.0.2=py37hf63ae98_0
- jupyterlab_server=1.0.0=py_0
- kiwisolver=1.1.0=py37hc9558a2_0
- krb5=1.16.3=h05b26f9_1001
- libblas=3.8.0=7_openblas
- libcblas=3.8.0=7_openblas
- libcurl=7.64.1=hda55be3_0
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libglu=9.0.0=hf484d3e_1000
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=7_openblas
- libpng=1.6.37=hed695b0_0
- libsodium=1.0.16=h1bed415_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=8.2.0=hdf63c60_1
- libtiff=4.0.10=h57b8799_1003
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_0
- llvmlite=0.28.0=py37hdbcaa40_0
- louvain=0.6.1=py37hf484d3e_2
- lz4-c=1.8.3=he1b5a44_1001
- lzo=2.10=h14c3975_1000
- make=4.2.1=h14c3975_2004
- markupsafe=1.1.1=py37h7b6447c_0
- mistune=0.8.4=py37h7b6447c_0
- mock=3.0.5=py37_0
- natsort=6.0.0=py_0
- nbconvert=5.5.0=py_0
- nbformat=4.4.0=py37_0
- ncurses=6.1=he6710b0_1
- networkx=2.3=py_0
- notebook=6.0.0=py37_0
- numba=0.43.1=py37hf2d7682_0
- numexpr=2.6.9=py37h637b7d7_1000
- numpy=1.16.4=py37h95a1406_0
- openblas=0.3.5=h9ac9557_1001
- openssl=1.1.1c=h7b6447c_1
- pandas=0.24.2=py37hb3f55d8_0
- pandoc=2.7.2=0
- pandocfilters=1.4.2=py37_1
- pango=1.40.14=h4ea9474_1004
- parso=0.5.0=py_0
- patsy=0.5.1=py_0
- pcre=8.41=hf484d3e_1003
- pexpect=4.7.0=py37_0
- pickleshare=0.7.5=py37_0
- pip=19.1.1=py37_0
- pixman=0.34.0=h14c3975_1003
- prometheus_client=0.7.1=py_0
- prompt_toolkit=2.0.9=py37_0
- pthread-stubs=0.4=h14c3975_1001
- ptyprocess=0.6.0=py37_0
- pycairo=1.18.1=py37h438ddbb_0
- pygments=2.4.2=py_0
- pyparsing=2.4.0=py_0
- pyqt=5.9.2=py37hcca6a23_0
- pyrsistent=0.14.11=py37h7b6447c_0
- pytables=3.5.2=py37ha1aa75f_0
- python=3.7.3=h0371630_0
- python-dateutil=2.8.0=py37_0
- python-igraph=0.7.1.post7=py37h516909a_0
- pytz=2019.1=py_0
- pyzmq=18.0.0=py37he6710b0_0
- qt=5.9.7=h52cfd70_2
- qtconsole=4.5.1=py_0
- r-askpass=1.1=r351h96ca727_0
- r-assertthat=0.2.1=r351h6115d3f_0
- r-backports=1.1.4=r351hcdcec82_0
- r-base=3.5.1=h271c98b_1006
- r-base64enc=0.1_3=r351h96ca727_1002
- r-bh=1.69.0_1=r351h6115d3f_0
- r-bibtex=0.4.2=r351h96ca727_1002
- r-boot=1.3_22=r351_0
- r-broom=0.5.2=r351h6115d3f_0
- r-callr=3.2.0=r351h6115d3f_0
- r-caret=6.0_82=r351hcdcec82_0
- r-cellranger=1.1.0=r351h6115d3f_1001
- r-class=7.3_15=r351h96ca727_1000
- r-cli=1.1.0=r351h6115d3f_0
- r-clipr=0.6.0=r351h6115d3f_0
- r-cluster=2.0.9=r351h9bbef5b_0
- r-codetools=0.2_16=r351h6115d3f_1000
- r-colorspace=1.4_1=r351hcdcec82_0
- r-crayon=1.3.4=r351h6115d3f_1001
- r-crosstalk=1.0.0=r351h6115d3f_1001
- r-curl=3.3=r351h96ca727_0
- r-data.table=1.12.2=r351hcdcec82_0
- r-dbi=1.0.0=r351h6115d3f_1001
- r-dbplyr=1.4.1=r35h6115d3f_0
- r-digest=0.6.19=r351h0357c0b_0
- r-dplyr=0.8.1=r351h0357c0b_0
- r-ellipsis=0.1.0=r351h96ca727_0
- r-essentials=3.5.1=r351_2000
- r-evaluate=0.14=r35h6115d3f_0
- r-fansi=0.4.0=r351h96ca727_1000
- r-forcats=0.4.0=r351h6115d3f_0
- r-foreach=1.4.4=r351h6115d3f_1001
- r-foreign=0.8_71=r351h96ca727_1002
- r-formatr=1.6=r351h6115d3f_0
- r-fs=1.3.1=r351h0357c0b_0
- r-generics=0.0.2=r351h6115d3f_1001
- r-ggplot2=3.1.1=r351h6115d3f_0
- r-gistr=0.4.2=r351h6115d3f_1001
- r-glmnet=2.0_16=r351ha65eedd_1001
- r-glue=1.3.1=r351hcdcec82_0
- r-gower=0.2.0=r351h96ca727_0
- r-gtable=0.3.0=r351h6115d3f_0
- r-haven=2.1.0=r351h29659fb_0
- r-hexbin=1.27.3=r351h9bbef5b_0
- r-highr=0.8=r351h6115d3f_0
- r-hms=0.4.2=r351h6115d3f_1000
- r-htmltools=0.3.6=r351hf484d3e_1002
- r-htmlwidgets=1.3=r351h6115d3f_1000
- r-httpuv=1.5.1=r351h0357c0b_0
- r-httr=1.4.0=r351h6115d3f_1000
- r-ipred=0.9_8=r351h96ca727_1000
- r-irdisplay=0.7=r351_1000
- r-irkernel=1.0.1=r351h6115d3f_0
- r-iterators=1.0.10=r351h6115d3f_1001
- r-jsonlite=1.6=r351h96ca727_1000
- r-kernsmooth=2.23_15=r351ha65eedd_1002
- r-knitr=1.23=r351h6115d3f_0
- r-labeling=0.3=r351h6115d3f_1001
- r-later=0.8.0=r351h29659fb_0
- r-lattice=0.20_38=r351h96ca727_1000
- r-lava=1.6.5=r351h6115d3f_0
- r-lazyeval=0.2.2=r351hcdcec82_0
- r-lubridate=1.7.4=r351h29659fb_1001
- r-magrittr=1.5=r351h6115d3f_1001
- r-manipulatewidget=0.10.0=r351h6115d3f_1000
- r-maps=3.3.0=r351h96ca727_1002
- r-markdown=0.9=r351h96ca727_1000
- r-mass=7.3_51.4=r351hcdcec82_0
- r-matrix=1.2_17=r351hcdcec82_0
- r-mgcv=1.8_28=r351hcdcec82_0
- r-mime=0.6=r351h96ca727_1000
- r-miniui=0.1.1.1=r351h6115d3f_1000
- r-modelmetrics=1.2.2=r351h0357c0b_0
- r-modelr=0.1.4=r351h6115d3f_0
- r-munsell=0.5.0=r351h6115d3f_1001
- r-nlme=3.1_140=r351h9bbef5b_0
- r-nnet=7.3_12=r351h96ca727_1002
- r-numderiv=2016.8_1=r351h6115d3f_1001
- r-openssl=1.3=r351h9c8475f_0
- r-pbdzmq=0.3_3=r351h47a35c4_1001
- r-pillar=1.4.1=h6115d3f_0
- r-pkgconfig=2.0.2=r351h6115d3f_1001
- r-pkgmaker=0.27=r351h6115d3f_1000
- r-plogr=0.2.0=r351h6115d3f_1001
- r-plyr=1.8.4=r351h29659fb_1002
- r-prettyunits=1.0.2=r351h6115d3f_1001
- r-processx=3.3.1=r351hcdcec82_0
- r-prodlim=2018.04.18=r351h29659fb_1002
- r-progress=1.2.2=r351h6115d3f_0
- r-promises=1.0.1=r351h29659fb_1000
- r-pryr=0.1.4=r351h29659fb_1002
- r-ps=1.3.0=r351h96ca727_1000
- r-purrr=0.3.2=r351hcdcec82_0
- r-quantmod=0.4_13=r351h6115d3f_1000
- r-r6=2.4.0=r351h6115d3f_0
- r-randomforest=4.6_14=r351ha65eedd_1000
- r-rbokeh=0.5.0=r351h6115d3f_1001
- r-rcolorbrewer=1.1_2=r351h6115d3f_1001
- r-rcpp=1.0.1=r351h0357c0b_0
- r-rcpproll=0.3.0=r351h29659fb_1000
- r-readr=1.3.1=r351h29659fb_1000
- r-readxl=1.3.1=r351h0357c0b_0
- r-recipes=0.1.5=r351h6115d3f_0
- r-recommended=3.5.1=r351_1001
- r-registry=0.5=r351h6115d3f_1001
- r-rematch=1.0.1=r351h6115d3f_1001
- r-repr=1.0.1=r351h6115d3f_0
- r-reprex=0.3.0=r351h6115d3f_0
- r-reshape2=1.4.3=r351h29659fb_1003
- r-rgl=0.100.19=r351ha39242b_0
- r-rlang=0.3.4=r351hcdcec82_0
- r-rmarkdown=1.12=r351h6115d3f_0
- r-rngtools=1.3.1=r351h6115d3f_1001
- r-rpart=4.1_15=r351hcdcec82_0
- r-rstudioapi=0.10=r351h6115d3f_0
- r-rvest=0.3.4=r351h6115d3f_0
- r-scales=1.0.0=r351h29659fb_1001
- r-selectr=0.4_1=r351h6115d3f_1000
- r-shiny=1.3.2=r351h6115d3f_0
- r-sourcetools=0.1.7=r351hf484d3e_1000
- r-spatial=7.3_11=r351h96ca727_1002
- r-squarem=2017.10_1=r351h6115d3f_1001
- r-stringi=1.4.3=r351h0357c0b_0
- r-stringr=1.4.0=r351h6115d3f_0
- r-survival=2.44_1.1=r351hcdcec82_0
- r-sys=3.2=r351hcdcec82_0
- r-tibble=2.1.3=r35hcdcec82_0
- r-tidyr=0.8.3=r351h0357c0b_0
- r-tidyselect=0.2.5=r351h29659fb_1000
- r-tidyverse=1.2.1=r351h6115d3f_1001
- r-timedate=3043.102=r351h6115d3f_1000
- r-tinytex=0.13=r351h6115d3f_0
- r-ttr=0.23_4=r351ha65eedd_1000
- r-utf8=1.1.4=r351h96ca727_1000
- r-uuid=0.1_2=r351h96ca727_1001
- r-vctrs=0.1.0=r351h96ca727_1000
- r-viridislite=0.3.0=r351h6115d3f_1001
- r-webshot=0.5.1=r351h6115d3f_1000
- r-whisker=0.3_2=r351h6115d3f_1001
- r-withr=2.1.2=r351h6115d3f_1000
- r-xfun=0.7=r351h6115d3f_0
- r-xml2=1.2.0=r351h29659fb_1002
- r-xtable=1.8_4=r351h6115d3f_0
- r-xts=0.11_1=r351h96ca727_1000
- r-yaml=2.2.0=r351h96ca727_1001
- r-zeallot=0.1.0=r351h6115d3f_1000
- r-zoo=1.8_5=r351hcdcec82_0
- readline=7.0=h7b6447c_5
- scikit-learn=0.20.3=py37ha8026db_1
- scipy=1.3.0=py37h921218d_0
- seaborn=0.9.0=py_1
- send2trash=1.5.0=py37_0
- setuptools=41.0.1=py37_0
- simplegeneric=0.8.1=py_1
- sip=4.19.8=py37hf484d3e_1000
- six=1.12.0=py37_0
- sqlite=3.29.0=h7b6447c_0
- terminado=0.8.2=py37_0
- testpath=0.4.2=py37_0
- tk=8.6.8=hbc83047_0
- tktable=2.10=h14c3975_0
- tornado=6.0.3=py37h7b6447c_0
- tqdm=4.32.1=py_0
- traitlets=4.3.2=py37_0
- tzlocal=1.5.1=py_0
- wcwidth=0.1.7=py37_0
- webencodings=0.5.1=py37_1
- wheel=0.33.4=py37_0
- widgetsnbextension=3.4.2=py37_1000
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.9=h516909a_1004
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.7=h14c3975_1000
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_4
- zeromq=4.3.1=he6710b0_3
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.0=h3b9ef0a_0
- pip:
- absl-py==0.7.1
- adjusttext==0.7.3
- anndata==0.6.22.post1
- anndata2ri==0.1.dev66+3fe0c7d
- annoy==1.15.2
- astor==0.8.0
- atomicwrites==1.3.0
- bbknn==1.3.4
- cffi==1.12.3
- chardet==3.0.4
- cmake==3.14.4
- cycler==0.10.0
- cython==0.29.10
- docutils==0.14
- fa2==0.3.5
- fbpca==1.0
- flit==1.3
- future-fstrings==1.1.0
- gast==0.2.2
- get-version==2.0.6
- google-pasta==0.1.7
- gprofiler==1.2.2
- grpcio==1.21.1
- idna==2.8
- importlib-metadata==0.17
- intervaltree==2.1.0
- joblib==0.13.2
- keras==2.2.4
- keras-applications==1.0.8
- keras-preprocessing==1.1.0
- markdown==3.1.1
- matplotlib==3.0.3
- mnnpy==0.1.9.5
- more-itertools==7.0.0
- multicoretsne==0.1
- packaging==19.0
- pluggy==0.12.0
- protobuf==3.8.0
- py==1.8.0
- pycparser==2.19
- pytest==4.6.2
- pytoml==0.1.20
- pyyaml==5.1.1
- requests==2.22.0
- rpy2==3.0.4
- scanorama==1.2
- scanpy==1.4.3+83.gd094e05
- scgen==1.0.0.dev184+2bed0f0
- sklearn==0.0
- sortedcontainers==2.1.0
- statsmodels==0.10.0
- tensorboard==1.14.0
- tensorflow==1.14.0
- tensorflow-estimator==1.14.0
- termcolor==1.1.0
- umap-learn==0.3.9
- urllib3==1.25.3
- werkzeug==0.15.4
- wrapt==1.11.2
- zipp==0.5.1
prefix: /home/m/muellermi/bin/miniconda3/envs/sc_tutorial