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co2usa_dataset_summary_info.m
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co2usa_dataset_summary_info.m
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clear all
close all
set(0,'DefaultFigureWindowStyle','docked')
cities = {
'boston'
'indianapolis'
'los_angeles'
'portland'
'salt_lake_city'
'san_francisco_beacon'
'san_francisco_baaqmd'
'toronto'
'washington_dc_baltimore'
};
species_to_load = {'co2'
'ch4'
'co'
};
currentFolder = pwd;
readFolder = fullfile(currentFolder(1:regexp(currentFolder,'gcloud.utah.edu')+14),'data','co2-usa','synthesis_output_ornl_new','netCDF_formatted_files');
save_overview_image = 'n';
co2_usa = co2usa_load_netCDF(cities,species_to_load,readFolder,save_overview_image);
species = 'co2';
%% Author List
authors = cell(1,4);
count = 1;
for ii = 1:size(cities,1)
city = cities{ii,1}; %if ~isfield(co2_usa,city); continue; end
site_codes = fieldnames(co2_usa.(city)); site_codes = site_codes(contains(site_codes,[species,'_']));
providers_total_listed = str2double(co2_usa.(city).(site_codes{1}).global_attributes.provider_total_listed);
for j = 1:providers_total_listed
authors{count,2} = co2_usa.(city).(site_codes{1}).global_attributes.(['provider_',num2str(j),'_name']);
name_parts = strsplit(authors{count,2});
authors{count,1} = name_parts{end};
authors{count,3} = co2_usa.(city).(site_codes{1}).global_attributes.(['provider_',num2str(j),'_affiliation']);
authors{count,4} = co2_usa.(city).(site_codes{1}).global_attributes.(['provider_',num2str(j),'_email']);
authors{count,5} = co2_usa.(city).(site_codes{1}).global_attributes.(['provider_',num2str(j),'_orcid']);
count = count+1;
end
end
% List of all CO2-USA authors/affiliation/email alphabetized by last name
authors = sortrows(authors,1); % Sort alphabetically
authors = [{'Mitchell','Logan E. Mitchell','University of Utah','logan.mitchell@utah.edu','https://orcid.org/0000-0002-8749-954X'};...
{'Lin','John C. Lin','University of Utah','John.Lin@utah.edu','https://orcid.org/0000-0003-2794-184X'};...
{'Hutyra','Lucy R. Hutyra','Boston University','lrhutyra@bu.edu',''}; authors]; % Add 3 primary authors
[~,ia,~] = unique(authors(:,1)); % find duplicates
authors = authors(sortrows(ia),:); % remove duplicate while preserving author order (3 primary authors, alphabetically after that)
fprintf('Data set author list:\n')
for ii = 1:length(authors)
fprintf('%-25s %-65s %-35s %s\n',authors{ii,2},authors{ii,3},authors{ii,4},authors{ii,5})
end
%% Overall dataset start and stop date
city_dataset_start_date = repmat(datetime(2050,1,1),length(cities),1); % Set dummy values that will be replaced.
city_dataset_stop_date = repmat(datetime(1970,1,1),length(cities),1); % Set dummy values that will be replaced.
for ii = 1:size(cities,1)
city = cities{ii,1};
t_city = tic;
fprintf('Working on %s:\n',city)
site_codes = fieldnames(co2_usa.(city)); site_codes = site_codes(contains(site_codes,[species,'_']));
for usc_i = 1:length(site_codes) % Loops through each site
site = site_codes{usc_i}; if strcmp(site_codes{usc_i},[species,'_background']); continue; end % Skip the background
city_dataset_start_date(ii,1) = min([city_dataset_start_date(ii,1),...
datetime(co2_usa.(city).(site).global_attributes.('dataset_start_date'),'InputFormat','yyyy-MM-dd''T''HH:mm:ss''Z')]);
city_dataset_stop_date(ii,1) = max([city_dataset_stop_date(ii,1),...
datetime(co2_usa.(city).(site).global_attributes.('dataset_stop_date'),'InputFormat','yyyy-MM-dd''T''HH:mm:ss''Z')]);
end
end
co2usa_dataset_start_date = min(city_dataset_start_date);
co2usa_dataset_stop_date = max(city_dataset_stop_date);
fprintf('Done.\n')
fprintf('Overall dataset start date: %s\n',datestr(co2usa_dataset_start_date,'yyyy-mm-dd'))
fprintf('Overall dataset stop date: %s\n',datestr(co2usa_dataset_stop_date,'yyyy-mm-dd'))
%% Bounding Box
co2usa_dataset_n_limit = nan;
co2usa_dataset_s_limit = nan;
co2usa_dataset_e_limit = nan;
co2usa_dataset_w_limit = nan;
for ii = 1:size(cities,1)
city = cities{ii,1};
site_codes = fieldnames(co2_usa.(city)); site_codes = site_codes(contains(site_codes,[species,'_']));
city_lats = nan(size(site_codes,1),1);
city_lons = nan(size(site_codes,1),1);
for usc_i = 1:length(site_codes) % Loops through each site
if strcmp(site_codes{usc_i},[species,'_background']); continue; end % Skip the background
site = site_codes{usc_i};
city_lats(usc_i,1) = str2double(co2_usa.(city).(site).global_attributes.('site_latitude'));
city_lons(usc_i,1) = str2double(co2_usa.(city).(site).global_attributes.('site_longitude'));
fprintf('%s-%s: %0.4f %0.4f\n',city,site,city_lats(usc_i,1),city_lons(usc_i,1))
end
fprintf('%s overall average: %0.4f %0.4f\n',city,nanmean(city_lats),nanmean(city_lons))
fprintf('Bounding box: N=%0.4f, S=%0.4f, W=%0.4f, E=%0.4f.\n',nanmax(city_lats),nanmin(city_lats),nanmin(city_lons),nanmax(city_lons))
co2usa_dataset_n_limit = max([co2usa_dataset_n_limit,nanmax(city_lats)]);
co2usa_dataset_s_limit = min([co2usa_dataset_s_limit,nanmin(city_lats)]);
co2usa_dataset_w_limit = min([co2usa_dataset_w_limit,nanmin(city_lons)]);
co2usa_dataset_e_limit = max([co2usa_dataset_e_limit,nanmax(city_lons)]);
end
fprintf('Done.\n')
fprintf('Overall CO2-USA Bounding box: N=%0.4f, S=%0.4f, W=%0.4f, E=%0.4f.\n',co2usa_dataset_n_limit,co2usa_dataset_s_limit,co2usa_dataset_w_limit,co2usa_dataset_e_limit)
%% File number & size
co2usa_nc_file_size = 0;
co2usa_text_file_size = 0;
co2usa_total_files = 0;
readFolder = fullfile(currentFolder(1:regexp(currentFolder,'gcloud.utah.edu')+14),'data','co2-usa','synthesis_output_ornl_new');
for ii = 1:size(cities,1)
city = cities{ii,1};
fn_nc = dir(fullfile(readFolder,'netCDF_formatted_files',[city,'*.nc']));
co2usa_nc_file_size = co2usa_nc_file_size+sum(cell2mat({fn_nc.bytes}));
fn_text = dir(fullfile(readFolder,'txt_formatted_files',[city,'*.txt']));
co2usa_text_file_size = co2usa_text_file_size+sum(cell2mat({fn_text.bytes}));
co2usa_total_files = co2usa_total_files+length(fn_nc)+length(fn_text);
end
fprintf('Total number of files in the dataset is %0.0f.\n',co2usa_total_files)
fprintf('Total dataset file size is %0.0f MB.\n',(co2usa_nc_file_size+co2usa_text_file_size)/1000000)
%% Check the data set for duplicate times
for kk = 1:length(species_to_load)
species = species_to_load{kk};
for ii = 1:size(cities,1)
city = cities{ii,1};
site_codes = fieldnames(co2_usa.(city)); site_codes = site_codes(contains(site_codes,[species,'_']));
for usc_i = 1:length(site_codes) % Loops through each site
site = site_codes{usc_i};
[~,ia,~] = unique(co2_usa.(city).(site).time);
f2 = setdiff(1:numel(co2_usa.(city).(site).time),ia);
if ~isempty(f2)
fprintf('Duplicate times found in %s at %s on:\n',city,site)
for jj = 1:length(f2)
fprintf('%s\n',co2_usa.(city).(site).time(f2(jj)))
end
end
end
end
end