vlachos.bib

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%% http://bibdesk.sourceforge.net/


%% Created for Andreas Vlachos at 2011-11-30 15:51:30 +0000 


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@inproceedings{clark2013science,
 author = {Clark, Peter and Harrison, Philip and Balasubramanian, Niranjan},
 title = {A Study of the Knowledge Base Requirements for Passing an Elementary Science Test},
 booktitle = {Proceedings of the 2013 Workshop on Automated Knowledge Base Construction},
 year = {2013},
 location = {San Francisco, CA},
 pages = {37--42},
} 

@inproceedings{BosMarkert2005EMNLP,
   title     = {Recognising Textual Entailment with Logical Inference},
   author    = {Bos, Johan and Markert, Katja},
   booktitle = {Proceedings of the 2005 Conference on Empirical Methods in Natural Language Processing (EMNLP 2005)},
   pages     = {628--635},
   year      = {2005}
}

@PhdThesis{petrovic2013thesis,
  title={Real-time event detection in massive streams},
  author={Petrovic, Sasa},
  year={2013},
  school={School of Informatics, University of Edinburgh}
}

@inproceedings{frank2001ordinal,
 author = {Frank, Eibe and Hall, Mark},
 title = {A Simple Approach to Ordinal Classification},
 booktitle = {Proceedings of the 12th European Conference on Machine Learning},
 year = {2001},
 pages = {145--156},
} 

@InProceedings{agirre:2013sts,
  author    = {Agirre, Eneko  and  Cer, Daniel  and  Diab, Mona  and  Gonzalez-Agirre, Aitor  and  Guo, Weiwei},
  title     = {*SEM 2013 shared task: Semantic Textual Similarity},
  booktitle = {Proceedings of the Second Joint Conference on Lexical and Computational Semantics and the Shared Task: Semantic Textual Similarity},
  year      = {2013},
  address   = {Atlanta, GA},
  pages     = {32--43},
}


@techreport{diakopoulos2014account,
title={Algorithmic Accountability Reporting: On the Investigation of Black Boxes},
author={Nick Diakopoulos},
year = {2014},
institution = {Tow Center for Digital Journalism},
}

@inproceedings{cohen2011computational,
  title={Computational Journalism: A Call to Arms to Database Researchers.},
  author={Cohen, Sarah and Li, Chengkai and Yang, Jun and Yu, Cong},
  booktitle={Proceedings of the Conference on Innovative Data Systems Research},
  volume={2011},
  pages={148--151},
  year={2011}
}

@inproceedings{flew2012computational,
          author = {Terry Flew and Anna Daniel and Christina L. Spurgeon},
       booktitle = {Proceedings of the Australian and New Zealand Communication Association Conference},
           title = {The promise of computational journalism. },
           pages = {1--19},
            year = {2012},
}


@InProceedings{zhang2013distant,
  author    = {Zhang, Xingxing  and  Zhang, Jianwen  and  Zeng, Junyu  and  Yan, Jun  and  Chen, Zheng  and  Sui, Zhifang},
  title     = {Towards Accurate Distant Supervision for Relational Facts Extraction},
  booktitle = {Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics (Volume 2: Short Papers)},
  month     = {August},
  year      = {2013},
  address   = {Sofia, Bulgaria},
  publisher = {Association for Computational Linguistics},
  pages     = {810--815},
  url       = {http://www.aclweb.org/anthology/P13-2141}
}


@article{lewis2013dist,
 author = {Lewis, Mike and Steedman, Mark},
   journal = {Transactions of the Association for Computational Linguistics},
     pages = {179--192},
      title = {Combined Distributional and Logical Semantics}, 
       volume = {1},
        year = {2013} }

@inproceedings{he-daume-eisner-2013,
	Address = {Seattle},
	Author = {He He and Hal {Daum\'{e} III} and Jason Eisner},
	Booktitle = {Proceedings of the 2013 Conference on Empirical Methods in Natural Language Processing},
	Month = oct,
	Pages = {1455--1464},
	Title = {Dynamic Feature Selection for Dependency Parsing},
	Year = {2013}}

@inproceedings{he2012coaching,
	Author = {He He and Hal {Daum\'e III} and Jason Eisner},
	Booktitle = {Proceedings of Neural Information Processing Systems},
	Year = {2012},
	Title = {Imitation Learning by Coaching}
}


@INPROCEEDINGS{Och00Alignment,
    author = {Franz Josef Och and Hermann Ney},
    title = {Improved Statistical Alignment Models},
    booktitle = {Proceedings of the 38th Annual Meeting of the Association for Computational Linguistics},
    year = {2000},
ADDRESS={ Hong Kong, China},
    pages = {440--447}
}


@inproceedings{surdeanu2012mimlre,
 author = {Surdeanu, Mihai and Tibshirani, Julie and Nallapati, Ramesh and Manning, Christopher D.},
 title = {Multi-instance multi-label learning for relation extraction},
 booktitle = {Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning},
 series = {EMNLP-CoNLL '12},
 year = {2012},
 location = {Jeju Island, Korea},
 pages = {455--465},
 numpages = {11},
 url = {http://dl.acm.org/citation.cfm?id=2390948.2391003},
 acmid = {2391003},
 publisher = {Association for Computational Linguistics},
 address = {Stroudsburg, PA, USA},
} 

@inproceedings{haghighi2010templateIE,
 author = {Haghighi, Aria and Klein, Dan},
 title = {An entity-level approach to information extraction},
 booktitle = {Proceedings of the ACL 2010 Conference Short Papers},
 series = {ACLShort '10},
 year = {2010},
 location = {Uppsala, Sweden},
 pages = {291--295},
 numpages = {5},
 url = {http://dl.acm.org/citation.cfm?id=1858842.1858896},
 acmid = {1858896},
 publisher = {Association for Computational Linguistics},
 address = {Stroudsburg, PA, USA},
} 


@book{mani2012geo,
  author    = {Inderjeet Mani and
               James Pustejovsky},
  title     = {Interpreting Motion - Grounded Representations for Spatial
               Language},
  publisher = {Oxford University Press},
  series    = {Explorations in language and space},
  volume    = {5},
  year      = {2012},
  pages     = {I-XII, 1-166},
}


@InProceedings{tang2001semanticParsing,
title={Using Multiple Clause Constructors in Inductive Logic Programming for Semantic Parsing},
author={Lappoon R. Tang and Raymond J. Mooney},
booktitle={Proceedings of the 12th European Conference on Machine  Learning},
pages={466-477},
address={Freiburg, Germany},
year={2001}
}

@PhdThesis{tang2003thesis,
title={Integrating Top-down and Bottom-up Approaches in Inductive Logic Programming: Applications in Natural Language Processing and Relational Data Mining},
author={Lappoon R. Tang},
school={Department of Computer Sciences, University of Texas},
year={2003}
}

@InProceedings{tang2000nlidb,
title={Automated Construction of Database Interfaces: Integrating Statistical and Relational Learning for Semantic Parsing},
author={Lappoon R. Tang and Raymond J. Mooney},
booktitle={Proceedings of the Joint SIGDAT Conference on Empirical Methods in Natural Language Processing and Very Large Corpora},
pages={133-141},
address = {Hong Kong},
year={2000}
}

@article{schaal1999imitation,
  author = {Stefan Schaal},
  journal = {Trends in Cognitive Sciences},
  month = {June},
  number = 6,
  pages = {233--242},
  title = {Is imitation learning the route to humanoid robots?},
  volume = 3,
  year = 1999
}

@article{goldberg2013dynamic,
  author = {Yoav Goldberg and Joakim Nivre},
  journal = {Transactions of the Association for Computational Linguistics},
  month = {October},
  number = 1,
  pages = {403--414},
  title = {Training Deterministic Parsers with Non-Deterministic Oracles},
  volume = 3,
  year = 2013
}

@InProceedings{kwiatkowski2013emnlp,
  author    = {Kwiatkowski, Tom  and  Choi, Eunsol  and  Artzi, Yoav  and  Zettlemoyer, Luke},
  title     = {Scaling Semantic Parsers with On-the-Fly Ontology Matching},
  booktitle = {Proceedings of the 2013 Conference on Empirical Methods in Natural Language Processing},
  year      = {2013},
  address   = {Seattle, WA},
  pages     = {1545--1556},

}



@article{ner-sekine2007,
  author = {Nadeau, David and Sekine, Satoshi},
  journal = {Linguisticae Investigationes},
  month = {January},
  note = {Publisher: John Benjamins Publishing Company},
  number = 1,
  pages = {3--26},
  title = {A survey of named entity recognition and classification},
  volume = 30,
  year = 2007
}

@book{smith2011book,
title = {Linguistic Structure Prediction},
author = {Noah A. Smith},
year = {2011},
series = {Synthesis Lectures on Human Language Technologies},
publisher = {Morgan and Claypool},
month = {May}
} 


@inproceedings{branting1999drafting,
 author = {Branting, L. Karl and Callaway, Charles B. and Mott, Bradford W. and Lester, James C.},
 title = {Integrating discourse and domain knowledge for document drafting},
 booktitle = {Proceedings of the 7th international conference on Artificial intelligence and law},
 series = {ICAIL '99},
 year = {1999},
 isbn = {1-58113-165-8},
 location = {Oslo, Norway},
 pages = {214--220},
 numpages = {7},
 url = {http://doi.acm.org/10.1145/323706.323800},
 doi = {10.1145/323706.323800},
 acmid = {323800},
 publisher = {ACM},
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} 
@Book{riser2011book,
 title = {Reinforcement Learning for Adaptive Dialogue Systems},
 publisher = {Springer},
 year = {2011},
 author = {Verena Rieser and Oliver Lemon},
 ALTeditor = {},
 OPTkey = {},
 OPTvolume = {},
 OPTnumber = {},
 OPTseries = {},
 OPTaddress = {},
 OPTedition = {},
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 OPTkeywords = {},
}



@inproceedings{ross2011dagger,
  author    = {St{\'e}phane Ross and
               Geoffrey J. Gordon and
               Drew Bagnell},
  title     = {A Reduction of Imitation Learning and Structured Prediction
               to No-Regret Online Learning},
  booktitle   = {14th International Conference on Artificial Intelligence and Statistics},
  year      = {2011},
  pages     = {627-635},
}



@phdthesis{diarmuid08phd,
	Author = {Diarmuid {\'{O} S\'{e}aghdha}},
	School = {University of Cambridge},
	Title = {Learning compound noun semantics},
	Year = {2008}}

@phdthesis{liang11thesis,
	Author = {Percy Liang},
	Title = {Learning Dependency-Based Compositional Semantics},
	School = {University of California, Berkeley},
	Year = {2011}}

@inproceedings{jones2012bayesianTransducers,
 author = {Jones, Bevan Keeley and Johnson, Mark and Goldwater, Sharon},
 title = {Semantic parsing with {B}ayesian tree transducers},
 booktitle = {Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics},
  year = {2012},
 pages = {488--496},
} 

@inproceedings{mccarthy2007semeval,
  title={Semeval-2007 task 10: English lexical substitution task},
  author={McCarthy, Diana and Navigli, Roberto},
  booktitle={Proceedings of the 4th International Workshop on Semantic Evaluations},
  pages={48--53},
  year={2007},
  organization={Association for Computational Linguistics}
}


@inproceedings{weps2010,
	Author = {Artiles, Javier and Borthwick, Andrew and Gonzalo, Julio and Sekine, Satoshi and Amig\'{o}, Enrique},
	Booktitle = {Proceedings of the Conference on Multilingual and Multimodal Information Access Evaluation},
	Title = {{WePS}-3 Evaluation Campaign: Overview of the Web People Search Clustering and Attribute Extraction Tasks},
	Year = {2010}}

@inproceedings{erk2009gws,
	Acmid = {1687882},
	Address = {Stroudsburg, PA, USA},
	Author = {Erk, Katrin and McCarthy, Diana and Gaylord, Nicholas},
	Booktitle = {Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP: Volume 1 - Volume 1},
	Isbn = {978-1-932432-45-9},
	Location = {Suntec, Singapore},
	Numpages = {9},
	Pages = {10--18},
	Publisher = {Association for Computational Linguistics},
	Series = {ACL '09},
	Title = {Investigations on word senses and word usages},
	Url = {http://portal.acm.org/citation.cfm?id=1687878.1687882},
	Year = {2009},
	Bdsk-Url-1 = {http://portal.acm.org/citation.cfm?id=1687878.1687882}}

@inproceedings{ramage2009llda,
	Author = {Ramage, Daniel and Hall, David and Nallapati, Ramesh and Manning, Christopher D.},
	Booktitle = {Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing},
	Pages = {248--256},
	Title = {{Labeled LDA: a supervised topic model for credit attribution in multi-labeled corpora}},
	Year = {2009}}

@article{vlachos08al,
	Author = {Andreas Vlachos},
	Journal = {Computer, Speech and Language},
	Month = {July},
	Number = {2},
	Pages = {295-312},
	Title = {A stopping criterion for active learning},
	Volume = {22},
	Year = {2008}}

@inproceedings{benhur2002cluststab,
	Author = {Asa Ben-Hur and Andr{\'e} Elisseeff and Isabelle Guyon},
	Bibsource = {DBLP, http://dblp.uni-trier.de},
	Booktitle = {Proceedings of the Pacific Symposium on Biocomputing},
	Ee = {http://helix-web.stanford.edu/psb02/benhur.pdf},
	Pages = {6-17},
	Title = {A Stability Based Method for Discovering Structure in Clustered Data},
	Year = {2002}}

@inproceedings{carpenter07bio,
	Author = {Carpenter, Bob},
	Booktitle = {Proceedings of the 2nd Biocreative Workshop},
	Title = {{LingPipe} for 99.99 \% Recall of Gene Mentions},
	Year = {2007}}

@inproceedings{bionlp-st2011-overview,
	Author = {Kim, Jin-Dong and Pyysalo, Sampo and Ohta, Tomoko and Bossy, Robert and Tsujii, Jun'ichi},
	Booktitle = {Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task},
	Title = {{Overview of BioNLP Shared Task 2011}},
	Year = {2011},
	pages = {1-6}
  }

@inproceedings{bionlp-st2011-resources,
	Author = {Stenetorp, Pontus and Topi{\'c}, Goran and Pyysalo, Sampo and Ohta, Tomoko and Kim, Jin-Dong and Tsujii, Jun'ichi},
	Booktitle = {Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task},
	Title = {{BioNLP Shared Task 2011: Supporting Resources}},
	Year = {2011}}

@inproceedings{bionlp-st2011-ge,
	Author = {Kim, Jin-Dong and Wang, Yue and Takagi, Toshihisa and Yonezawa, Akinori},
	Booktitle = {Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task},
	Title = {{Overview of the Genia Event task in BioNLP Shared Task 2011}},
	Year = {2011},
	pages = {7--15},
}

@PhdThesis{syed2010phd,
 author = {Umar Syed},
 title = {Reinforcement learning without rewards},
 school = {Department of Computer Science, Princeton University},
 year = {2010},
}

@inproceedings{coates2008icml,
 author = {Coates, Adam and Abbeel, Pieter and Ng, Andrew Y.},
 title = {Learning for control from multiple demonstrations},
 booktitle = {Proceedings of the 25th international conference on Machine learning},
 year = {2008},
 pages = {144--151},
} 

@inproceedings{syed07dialog,
  author    = {Umar Syed and
               Robert E. Schapire},
  title     = {Imitation Learning with a Value-Based Prior},
  booktitle = {Proceedings of the Twenty-Third Conference on Uncertainty in Artificial Intelligence},
  year      = {2007},
  pages     = {384-391},
}

 . 2005. .  3(2--3), . 
@Article{copestake05mrs,
 author = {Ann Copestake and Dan Flickinger and Ivan Sag and Carl Pollard},
 title = {Minimal Recursion Semantics: An introduction},
 journal = {Research in Language and Computation},
 year = {2005},
 OPTkey = {},
 volume = {3},
 number = {2--3},
 pages = {281--332},
 OPTmonth = {},
 OPTnote = {},
 OPTannote = {},
 OPTurl = {},
 OPTurldate = {},
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 OPTissn = {},
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}

@article{vinh2010ami,
 author = {Vinh, Nguyen Xuan and Epps, Julien and Bailey, James},
 title = {Information Theoretic Measures for Clusterings Comparison: Variants, Properties, Normalization and Correction for Chance},
 journal = {Journal of Machine Learning Research},
 year = {2010},
 pages = {2837--2854},
 volume={11}
} 


@article{scikit2011learn,
 title={Scikit-learn: Machine Learning in {P}ython},
 author={Pedregosa, F. and Varoquaux, G. and Gramfort, A. and Michel, V.
         and Thirion, B. and Grisel, O. and Blondel, M. and Prettenhofer, P.
         and Weiss, R. and Dubourg, V. and Vanderplas, J. and Passos, A. and
         Cournapeau, D. and Brucher, M. and Perrot, M. and Duchesnay, E.},
 journal={Journal of Machine Learning Research},
 volume={12},
 pages={2825--2830},
 year={2011}
}


@inproceedings{turian2010wordrep,
	Author = {Turian, Joseph and Ratinov, Lev and Bengio, Yoshua},
	Booktitle = {Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics},
	Pages = {384--394},
	Title = {Word representations: a simple and general method for semi-supervised learning},
	Year = {2010}}

@phdthesis{mccc2010phd,
	Author = {David McClosky},
	School = {Department of Computer Science, Brown University},
	Title = {Any domain parsing: Automatic domain adaptation for natural language parsing},
	Year = {2010}}

@inproceedings{reichart2010type,
	Author = {Reichart, Roi and Abend, Omri and Rappoport, Ari},
	Booktitle = {Proceedings of the 14th Conference on Computational Natural Language Learning},
	Pages = {77--87},
	Title = {{Type level clustering evaluation: new measures and a POS induction case study}},
	Year = {2010}}

@inproceedings{popescu2003nlidb,
 author = {Popescu, Ana-Maria and Etzioni, Oren and Kautz, Henry},
 title = {Towards a theory of natural language interfaces to databases},
 booktitle = {Proceedings of the 8th International Conference on Intelligent User Interfaces},
 address = {Santa Monica, CA},
 year = {2003},
 pages = {149--157},
} 



@article{merialdo1994pos,
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	Volume = {20},
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@inproceedings{dasgupta2010multiclust,
	Author = {Sajib Dasgupta and Vincent Ng},
	Booktitle = {Proceedings of the 27th International Conference on Machine Learning},
	Pages = {263--270},
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	Year = 2010}

@article{brown92class-basedn-gram,
	Author = {Peter F. Brown and Peter V. deSouza and Robert L. Mercer and Vincent J. Della Pietra and Jenifer C. Lai},
	Journal = {Computational Linguistics},
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	Volume = {18},
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@inproceedings{guyon2009clusteringart,
	Author = {Isabelle Guyon and Ulrike Von Luxburg and Robert C. Williamson},
	Booktitle = {NIPS 2009 Workshop on Clustering Theory},
	Title = {Clustering: Science or art},
        Address = {Vancouver, Canada},
	Year = {2009}}


@inproceedings{andreas2013mt4sp,
	Author = {Jacob Andreas and Andreas Vlachos and Stephen Clark},
	year = {2013},
	Title = {Semantic Parsing as Machine Translation},
	Booktitle = {Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics (short papers)},
	location = {Bulgaria}
}

@inproceedings{vlachos2011searn,
	Author = {Andreas Vlachos and Mark Craven},
	Booktitle = {Proceedings of the Fifteenth Conference on Computational Natural Language Learning},
	Title = {{Search-based structured prediction applied to biomedical event extraction}},
	publisher = {Association for Computational Linguistics},
	pages     = {49--57},
	Year = {2011}}

@inproceedings{tsochantaridis2004svmstruct,
	Acmid = {1015341},
	Address = {New York, NY, USA},
	Author = {Tsochantaridis, Ioannis and Hofmann, Thomas and Joachims, Thorsten and Altun, Yasemin},
	Booktitle = {Proceedings of the 21st International Conference on Machine learning},
	Doi = {http://doi.acm.org/10.1145/1015330.1015341},
	Isbn = {1-58113-838-5},
	Location = {Banff, Alberta, Canada},
	Pages = {104--},
	Publisher = {ACM},
	Series = {ICML '04},
	Title = {Support vector machine learning for interdependent and structured output spaces},
	Url = {http://doi.acm.org/10.1145/1015330.1015341},
	Year = {2004},
	Bdsk-Url-1 = {http://doi.acm.org/10.1145/1015330.1015341}}

@inproceedings{david11folda,
	Author = {David Andrzejewski and Xiaojin Zhu and Mark Craven and Benjamin Recht.},
	Booktitle = {Proceedings of the 22nd International Joint Conferences on Artificial Intelligence},
	Title = {A Framework for Incorporating General Domain Knowledge into Latent {D}irichlet Allocation using First-Order Logic},
	Year = {2011}}

@inproceedings{zhu2009medlda,
	Author = {Zhu, Jun and Ahmed, Amr and Xing, Eric P.},
	Booktitle = {Proceedings of the 26th Annual International Conference on Machine Learning},
	Pages = {1257--1264},
	Title = {{MedLDA}: maximum margin supervised topic models for regression and classification},
	Year = {2009}}

@inproceedings{seaghdha2010selpref,
	Author = {Diarmuid {\'{O} S\'{e}aghdha}},
	Booktitle = {Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics},
	Pages = {435--444},
	Title = {Latent variable models of selectional preference},
	Year = {2010}}

@article{etzioni2008openIE,
 author = {Etzioni, Oren and Banko, Michele and Soderland, Stephen and Weld, Daniel S.},
 title = {Open information extraction from the web},
 journal = {Communications of the ACM},
 issue_date = {December 2008},
 volume = {51},
 number = {12},
 month = {December},
 year = {2008},
 pages = {68--74},
} 


@inproceedings{ritter2010selpref,
	Author = {Ritter, Alan and Mausam and Etzioni, Oren},
	Booktitle = {Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics},
	Pages = {424--434},
	Title = {{A latent Dirichlet allocation method for selectional preferences}},
	Year = {2010}}

@inproceedings{melville09activedual,
	Address = {Morristown, NJ, USA},
	Author = {Melville, Prem and Sindhwani, Vikas},
	Booktitle = {HLT '09: Proceedings of the NAACL HLT 2009 Workshop on Active Learning for Natural Language Processing},
	Location = {Boulder, Colorado},
	Pages = {49--57},
	Publisher = {Association for Computational Linguistics},
	Title = {Active dual supervision: reducing the cost of annotating examples and features},
	Year = {2009}}

@inproceedings{shen2007guided,
	Address = {Prague, Czech Republic},
	Author = {Shen, Libin and Satta, Giorgio and Joshi, Aravind},
	Booktitle = {Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics},
	Month = {June},
	Pages = {760--767},
	Publisher = {Association for Computational Linguistics},
	Title = {Guided Learning for Bidirectional Sequence Classification},
	Url = {http://www.aclweb.org/anthology/P07-1096},
	Year = {2007},
	Bdsk-Url-1 = {http://www.aclweb.org/anthology/P07-1096}}

@inproceedings{buyko2010emnlp,
	Acmid = {1870754},
	Address = {Morristown, NJ, USA},
	Author = {Buyko, Ekaterina and Hahn, Udo},
	Booktitle = {Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing},
	Location = {Cambridge, Massachusetts},
	Numpages = {11},
	Pages = {982--992},
	Publisher = {Association for Computational Linguistics},
	Series = {EMNLP '10},
	Title = {Evaluating the impact of alternative dependency graph encodings on solving event extraction tasks},
	Url = {http://portal.acm.org/citation.cfm?id=1870658.1870754},
	Year = {2010},
	Bdsk-Url-1 = {http://portal.acm.org/citation.cfm?id=1870658.1870754}}

@article{gildea2002srl,
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	Issn = {0891-2017},
	Issue = {3},
	Journal = {Computational Linguistics},
	Pages = {245--288},
	Publisher = {{MIT} Press},
	Title = {Automatic labeling of semantic roles},
	Url = {http://dx.doi.org/10.1162/089120102760275983},
	Volume = {28},
	Year = {2002},
	Bdsk-Url-1 = {http://dx.doi.org/10.1162/089120102760275983}}

@inproceedings{miwa2010coling,
	Author = {Makoto Miwa and Sampo Pyysalo and Tadayoshi Hara and Jun'ichi Tsujii},
	Booktitle = {Proceedings of the 23rd International Conference on Computational Linguistics},
	Pages = {779--787},
	Title = {Evaluating Dependency Representation for Event Extraction},
	Year = {2010}}

@article{maes2009sprl,
	Acmid = {1666240},
	Address = {Hingham, MA, USA},
	Author = {Maes, Francis and Denoyer, Ludovic and Gallinari, Patrick},
	Doi = {http://dx.doi.org/10.1007/s10994-009-5140-8},
	Issn = {0885-6125},
	Issue = {2-3},
	Journal = {Mach. Learn.},
	Keywords = {HTML to XML, Reinforcement learning, Sequence labeling, Structured prediction, Tree transformation},
	Month = {December},
	Numpages = {31},
	Pages = {271--301},
	Publisher = {Kluwer Academic Publishers},
	Title = {Structured prediction with reinforcement learning},
	Url = {http://dx.doi.org/10.1007/s10994-009-5140-8},
	Volume = {77},
	Year = {2009},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/s10994-009-5140-8}}

@inproceedings{reichart09parse,
	Address = {Morristown, NJ, USA},
	Author = {Reichart, Roi and Rappoport, Ari},
	Booktitle = {CoNLL '09: Proceedings of the Thirteenth Conference on Computational Natural Language Learning},
	Isbn = {978-1-932432-29-9},
	Location = {Boulder, Colorado},
	Pages = {156--164},
	Publisher = {Association for Computational Linguistics},
	Title = {Automatic selection of high quality parses created by a fully unsupervised parser},
	Year = {2009}}

@article{reichart2008multi,
	Author = {Reichart, R. and Tomanek, K. and Hahn, U. and Rappoport, A.},
	Citeulike-Article-Id = {5393861},
	Journal = {ACL08},
	Keywords = {active, mtl},
	Posted-At = {2009-08-07 18:02:33},
	Priority = {2},
	Title = {{Multi-task active learning for linguistic annotations}},
	Year = {2008}}

@inproceedings{reichart07parse,
	Address = {Prague, Czech Republic},
	Author = {Reichart, Roi and Rappoport, Ari},
	Booktitle = {Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics},
	Citeulike-Article-Id = {2873455},
	Citeulike-Linkout-0 = {http://www.aclweb.org/anthology-new/P/P07/P07-1052.bib},
	Citeulike-Linkout-1 = {http://www.aclweb.org/anthology-new/P/P07/P07-1052.pdf},
	Month = {June},
	Pages = {408--415},
	Posted-At = {2008-06-08 14:06:09},
	Publisher = {Association for Computational Linguistics},
	Title = {An Ensemble Method for Selection of High Quality Parses},
	Url = {http://www.aclweb.org/anthology-new/P/P07/P07-1052.bib},
	Year = {2007},
	Bdsk-Url-1 = {http://www.aclweb.org/anthology-new/P/P07/P07-1052.bib}}

@PhdThesis{abbeel2008phd,
 author = {Pieter Abbeel},
 title = {Apprenticeship Learning and Reinforcement Learning with Application to Robotic Control},
 school = {Department of Computer Science, Stanford University},
 year = {2008},
}


@inproceedings{abbeel2004irl,
	Author = {Abbeel, Pieter and Ng, Andrew Y.},
	Booktitle = {Proceedings of the 21st International Conference on Machine Learning},
	Pages = {46--53},
	Title = {Apprenticeship learning via inverse reinforcement learning},
	Year = {2004}}

@inproceedings{sag02mwe,
	Author = {Sag, Ivan A. and Baldwin, Timothy and Bond, Francis and Copestake, Ann A. and Flickinger, Dan},
	Booktitle = {Proceedings of the Third International Conference on Computational Linguistics and Intelligent Text Processing},
	Pages = {1--15},
	Title = {{Multiword Expressions: A Pain in the Neck for NLP}},
	Year = {2002}}

@article{copestake1990nlidb,
  AUTHOR = {Ann Copestake and Karen {Sparck Jones}},
  TITLE = {Natural Language Interfaces to Databases},
  JOURNAL = {Knowledge Engineering Review},
  VOLUME = {5},
  NUMBER = {4},
  YEAR = {1990},
  PAGES = {225-249}
}

@Manual{chen2003clang,
  title =        "Users Manual: {R}obo{C}up Soccer Server --- for Soccer Server Version 7.07 and Later",
  author =    "Chen, Mao and Dorer, Klaus and Foroughi, Ehsan and Heintz, Fredrick and Huang, ZhanXiang and Kapetanakis, Spiros and Kostiadis, Kostas and Kummeneje, Johan and Murray, Jan and Noda, Itsuki and Obst, Oliver and Riley, Pat and Steffens, Timo and Wang, Yi and Yin, Xiang",
  organization = "The {R}obo{C}up Federation",
  year =      "2003",
}

@inproceedings{kelley1983oz,
 author = {Kelley, John F.},
 title = {An empirical methodology for writing user-friendly natural language computer applications},
 booktitle = {Proceedings of the SIGCHI Conference on Human Factors in Computing Systems},
 year = {1983},
 location = {Boston, Massachusetts, USA},
 pages = {193--196},
} 


@inproceedings{snyder08multipos,
	Author = {Snyder, Benjamin and Naseem, Tahira and Eisenstein, Jacob and Barzilay, Regina},
	Booktitle = {Proceedings of the 2008 Conference on Empirical Methods in Natural Language Processing},
	Pages = {1041--1050},
	Title = {Unsupervised multilingual learning for POS tagging},
	Year = {2008}}

@InProceedings{wong2006wasp,
  author    = {Wong, Yuk Wah  and  Mooney, Raymond},
  title     = {Learning for Semantic Parsing with Statistical Machine Translation},
  booktitle = {Proceedings of the 2006 Human Language Technology Conference of the North American Chapter of the Association of Computational Linguistics},
  year      = {2006},
  address = {New York},
  pages     = {439--446}
}

@inproceedings{angeli2010generation,
  author = {G. Angeli and P. Liang and D. Klein},
  booktitle = {Proceeding of the 2010 Conference on Empirical Methods in Natural Language Processing},
  title = {A Simple Domain-Independent Probabilistic Approach to Generation},
  year = {2010},
}

@InProceedings{kulhmann2004robocup,
title={Guiding a Reinforcement Learner with Natural Language Advice: Initial  Results in RoboCup Soccer},
author={Gregory Kuhlmann and Peter Stone and Raymond J. Mooney and Jude W. Shavlik},
booktitle={The AAAI-2004 Workshop on Supervisory Control of Learning and Adaptive Systems},
address = {San Jose, California},
url="http://www.cs.utexas.edu/users/ai-lab/pub-view.php?PubID=126697",
year={2004}
}

@InProceedings{kate2006semanticParse,
title={Using String-Kernels for Learning Semantic Parsers},
author={Rohit J. Kate and Raymond J. Mooney},
booktitle={Proceedings of the 21st International Conference on Computational Linguistics and the 44th annual meeting of the ACL},
pages={913-920},
year={2006}
}

@inproceedings{kate:2010cardPyramid,
 author = {Kate, Rohit J. and Mooney, Raymond J.},
 title = {Joint entity and relation extraction using card-pyramid parsing},
 booktitle = {Proceedings of the Fourteenth Conference on Computational Natural Language Learning},
 series = {CoNLL '10},
 year = {2010},
 isbn = {978-1-932432-83-1},
 location = {Uppsala, Sweden},
 pages = {203--212},
 numpages = {10},
 url = {http://dl.acm.org/citation.cfm?id=1870568.1870592},
 acmid = {1870592},
 publisher = {Association for Computational Linguistics},
 address = {Stroudsburg, PA, USA},
} 

@InProceedings{kate2005funql,
title={Learning to Transform Natural to Formal Languages},
author={Rohit J. Kate and Yuk Wah Wong and Raymond J. Mooney},
booktitle={Proceedings of the Twentieth National Conference on Artificial Intelligence},
address = {Pittsburgh, PA},
pages={1062-1068},
year={2005}
}

@InProceedings{wong2007lambdaWasp,
title={Learning Synchronous Grammars for Semantic Parsing with Lambda Calculus},
author={Yuk Wah Wong and Raymond J. Mooney},
booktitle={Proceedings of the 45th Annual Meeting of the  Association for Computational Linguistics},
Address = {Prague, Czech Republic},
year={2007}
}

@phdthesis{wong2007thesis,
title={Learning for Semantic Parsing and Natural Language Generation Using Statistical Machine Translation Techniques},
author={Yuk Wah Wong},
school={Department of Computer Sciences, University of Texas at Austin},
year={2007}
}


@article{bunescu05ppi,
	Author = {Razvan Bunescu and Ruifang Ge and Rohit J. Kate and Edward M. Marcotte and Raymond J. Mooney and Arun K. Ramani and Yuk Wah Wong},
	Journal = {Artificial Intelligence in Medicine},
	Number = {2},
	Pages = {139 - 155},
	Title = {Comparative experiments on learning information extractors for proteins and their interactions},
	Volume = {33},
	Year = {2005}}

@article{smith09parsing,
	Author = {Larry H. Smith and W. John Wilbur},
	Journal = {Journal of Biomedical Informatics},
	Number = {5},
	Pages = {895 - 904},
	Title = {The value of parsing as feature generation for gene mention recognition},
	Volume = {42},
	Year = {2009}}

@inproceedings{dang08tree,
	Author = {Van B. Dang and Akiko N. Aizawa},
	Booktitle = {Proceedings of the Pacific-Asia Conference on Knowledge Discovery and Data Mining},
	Pages = {76-87},
	Title = {Multi-class Named Entity Recognition Via Bootstrapping with Dependency Tree-Based Patterns},
	Year = {2008}}

@inproceedings{cohen09logit,
	Author = {Cohen, Shay B. and Smith, Noah A.},
	Booktitle = {Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics},
	Location = {Boulder, Colorado},
	Pages = {74--82},
	Title = {Shared logistic normal distributions for soft parameter tying in unsupervised grammar induction},
	Year = {2009}}

@article{uzuner08deid,
	Author = {Uzuner, \"{O}zlem and Sibanda, Tawanda C. and Luo, Yuan and Szolovits, Peter},
	Journal = {Artificial Intelligence in Medicine},
	Number = {1},
	Pages = {13--35},
	Title = {A de-identifier for medical discharge summaries},
	Volume = {42},
	Year = {2008}}

@inproceedings{sanguinetti05spectral,
	Author = {Sanguinetti, Guido. and Laidler, Jonathan and Lawrence, Neil D.},
	Booktitle = {IEEE Workshop on Machine Learning for Signal Processing},
	Keywords = {clustering, software, spectral},
	Title = {Automatic Determination of the Number of Clusters Using Spectral Algorithms},
	Year = {2005}}

@inproceedings{conll2008,
	Author = {Mihai Surdeanu and Richard Johansson and Adam Meyers and Llu\'{i}s M\`{a}rquez and Joakim Nivre},
	Booktitle = {CoNLL 2008: Proceedings of the Twelfth Conference on Natural Language Learning},
	Pages = {159-177},
	Title = {The {CoNLL-2008} Shared Task on Joint Parsing of Syntactic and Semantic Dependencies},
	Year = {2008}}

@inproceedings{chen06spectral,
	Author = {Chen, Jinxiu and Ji, Donghong and Tan, Chew Lim and Niu, Zhengyu},
	Booktitle = {Proceedings of the COLING/ACL on Main conference poster sessions},
	Location = {Sydney, Australia},
	Pages = {89--96},
	Title = {Unsupervised relation disambiguation using spectral clustering},
	Year = {2006}}

@inproceedings{farkas2010conll,
	Author = {Richard Farkas and Veronika Vincze and Gyorgy Mora and Janos Csirik and Gyorgy Szarvas},
	Booktitle = {Proceedings of the CoNLL 2010 Shared Task},
	Title = {{The CoNLL 2010 Shared Task: Learning to Detect Hedges and their Scope in Natural Language Text}},
	Year = {2010}}

@inproceedings{vlachos2010conll,
	Author = {Andreas Vlachos and Mark Craven},
	Booktitle = {Proceedings of the CoNLL 2010 Shared Task},
	Title = {{Detecting Speculative Language using Syntactic Dependencies and Logistic Regression}},
	Year = {2010}}

@inproceedings{hamerly03kmeans,
	Author = {Greg Hamerly and Charles Elkan},
	Booktitle = {Proceedings of the Seventeenth Annual Conference on Neural Information Processing Systems},
	Pages = {281-288},
	Title = {Learning the {K} in {K}-Means},
	Year = {2003}}

@inproceedings{light2004spec,
	Author = {Light, Marc and Qiu, Xin Ying and Srinivasan, Padmini},
	Booktitle = {HLT-NAACL 2004 Workshop: BioLINK 2004, Linking Biological Literature, Ontologies and Databases},
	Pages = {17--24},
	Title = {{The Language of Bioscience: Facts, Speculations, and Statements In Between}},
	Year = 2004}

@article{medlock2008spec,
	Address = {San Diego, USA},
	Author = {Medlock, Ben},
	Doi = {http://dx.doi.org/10.1016/j.jbi.2008.01.001},
	Issn = {1532-0464},
	Journal = {J. of Biomedical Informatics},
	Number = {4},
	Pages = {636--654},
	Publisher = {Elsevier Science},
	Title = {Exploring hedge identification in biomedical literature},
	Volume = {41},
	Year = {2008},
	Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.jbi.2008.01.001}}

@inproceedings{kilicoglu2008spec,
	Author = {Kilicoglu, Halil and Bergler, Sabine},
	Booktitle = {BioNLP '08: Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
	Pages = {46--53},
	Title = {Recognizing speculative language in biomedical research articles: a linguistically motivated perspective},
	Year = {2008}}

@inproceedings{morante09spec,
	Address = {Morristown, NJ, USA},
	Author = {Morante, Roser and Daelemans, Walter},
	Booktitle = {BioNLP '09: Proceedings of the Workshop on BioNLP},
	Isbn = {978-1-932432-30-5},
	Location = {Boulder, Colorado},
	Pages = {28--36},
	Publisher = {Association for Computational Linguistics},
	Title = {Learning the scope of hedge cues in biomedical texts},
	Year = {2009}}

@inproceedings{morante2009neg,
 author = {Morante, Roser and Daelemans, Walter},
 title = {A metalearning approach to processing the scope of negation},
 booktitle = {Proceedings of the Thirteenth Conference on Computational Natural Language Learning},
 year = {2009},
 pages = {21--29},
 numpages = {9},
} 

@article{hyland1996hedge,
	Abstract = {Hedging is a well-documented feature of spoken discourse as a result of its role in qualifying categorical commitment and facilitating discussion Its use in academic writing has received less attention, however, and we know little about the functions it serves in different research fields and particular genres Hedging is a significant communicative resource for academics since it both confirms the individual's professional persona and represents a critical element in the rhetorical means of gaining acceptance of claims Hedges allow writers to anticipate possible opposition to claims by expressing statements with precision, caution, and diplomatic deference to the views of colleagues Based on a contextual analysis of 26 articles in molecular biology, this paper argues that hedging in scientific research writing cannot be fully understood in isolation from social and institutional contexts and suggests a pragmatic framework which reflects this interpretive environment 10.1093/applin/17.4.433},
	Author = {Hyland, Ken},
	Journal = {Applied Linguistics},
	Number = {4},
	Pages = {433--454},
	Title = {{Writing Without Conviction? Hedging in Science Research Articles}},
	Volume = {17},
	Year = {1996}}

@inproceedings{reichart2009nvi,
	Author = {Reichart, Roi and Rappoport, Ari},
	Booktitle = {Proceedings of the 13th Conference on Computational Natural Language Learning},
	Pages = {165--173},
	Title = {{The NVI clustering evaluation measure}},
	Year = {2009}}

@inproceedings{pradhan-etal-conll-st-2011-ontonotes,
	Address = {Portland, Oregon},
	Author = {Sameer Pradhan and Lance Ramshaw and Mitchell Marcus and Martha Palmer and Ralph Weischedel and Nianwen Xue},
	Booktitle = {Proceedings of the Fifteenth Conference on Computational Natural Language Learning (CoNLL 2011)},
	Month = {June},
	Title = {CoNLL-2011 Shared Task: Modeling Unrestricted Coreference in OntoNotes},
	Year = {2011}}

@inproceedings{medlock07weaklysupervised,
	Author = {Ben Medlock and Ted Briscoe},
	Booktitle = {Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics},
	Pages = {992--999},
	Title = {{Weakly Supervised Learning for Hedge Classification in Scientific Literature}},
	Year = {2007}}

@article{pang2008opinion,
	Address = {Hanover, MA, USA},
	Author = {Pang, Bo and Lee, Lillian},
	Doi = {http://dx.doi.org/10.1561/1500000011},
	Issn = {1554-0669},
	Journal = {Found. Trends Inf. Retr.},
	Number = {1-2},
	Pages = {1--135},
	Publisher = {Now Publishers Inc.},
	Title = {Opinion Mining and Sentiment Analysis},
	Volume = {2},
	Year = {2008},
	Bdsk-Url-1 = {http://dx.doi.org/10.1561/1500000011}}

@phdthesis{TWilsonDiss08,
	Author = {Theresa Ann Wilson},
	School = {University of Pittsburgh},
	Title = {Fine-grained Subjectivity and Sentiment Analysis: Recognizing the Intensity, Polarity, and Attitudes of Private States},
	Year = {2008}}

@article{chen2009verb,
	Author = {Chen, Jinying and Palmer, Martha},
	Journal = {Language Resources and Evaluation},
	Number = {2},
	Pages = {143-172},
	Title = {{Improving English Verb Sense Disambiguation Performance with Linguistically Motivated Features and Clear Sense Distinction Boundaries}},
	Volume = {43},
	Year = {2009}}
	
	@inproceedings{herbrich00ordinal,
  author = {Herbrich, R. and Graepel, T. and Obermayer, K.},
  booktitle = {Proceedings of Advances in Large Margin Classifiers},
  pages = {115-132},
  publisher = {{MIT} Press},
  title = {Large Margin Rank Boundaries for Ordinal Regression},
  year = 2000
}



@inproceedings{socher2013sentiment,
  Location = {Seattle, WA},
  Author = {Socher, Richard  and  Perelygin, Alex  and  Wu, Jean  and  Chuang, Jason  and  Manning, Christopher D.  and  Ng, Andrew Y.  and  Potts, Christopher},
  Booktitle = {Proceedings of the 2013 Conference on {E}mpirical {M}ethods in {N}atural {L}anguage {P}rocessing},
  Month = {October},
  Publisher = {Association for Computational Linguistics},
  Address = {Stroudsburg, PA},
  Title = {Recursive Deep Models for Semantic Compositionality Over a Sentiment Treebank},
  Pages = {1631--1642},
  Year = {2013}}

@article{he05csl,
	Author = {Yulan He and Steve Young},
	Journal = {Computer Speech {\&} Language},
	Number = {1},
	Pages = {85-106},
	Title = {Semantic processing using the Hidden Vector State model},
	Volume = {19},
	Year = {2005}}

@inproceedings{riedel13relation,
    author={Sebastian Riedel and Limin Yao and Benjamin M. Marlin and Andrew McCallum}, 
    title={Relation Extraction with Matrix Factorization and Universal Schemas}, 
    address = {Atlanta, GA},
    booktitle={Proceedings of the 2013 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies}, 
    year={2013}, 
}


@inproceedings{ruiz08slumln,
	Author = {Ivan Meza and Sebastian Riedel and Oliver Lemon},
	Booktitle = {Proceedings of the 33rd International Conference on Acoustics, Speech, and Signal Processing},
	Pages = {5021-5024},
	Title = {Accurate Statistical Spoken Language Understanding from Limited Development Resources},
	Year = {2008}}

@inproceedings{mairesse09icassp,
	Author = {Fran\c{c}ois Mairesse and Milica Gasic and Filip Jurc\'{\i}cek and Simon Keizer and Blaise Thomson and Kai Yu and Steve Young},
	Booktitle = {Proceedings of the 34th IEEE International Conference on Acoustics, Speech and Signal Processing},
	Pages = {4749-4752},
	Title = {Spoken language understanding from unaligned data using discriminative classification models},
        Address = {Taipei, Taiwan},
	Year = {2009}}

@inproceedings{tur2010atis,
	Author = {Gokhan Tur and Dilek Hakkani-T{\"u}r and Larry Heck},
	Booktitle = {IEEE Workshop on Spoken Language Technologies},
	Title = {What's Left to Be Understood in {ATIS}?},
	Year = {2010}}

@inproceedings{clarke2010conll,
	Author = {James Clarke and Dan Goldwasser and Ming-Wei Chang and Dan Roth},
	Booktitle = {Proceedings of the 14th Conference on Computational Natural Language Learning},
	Pages = {18--27},
	Title = {Driving Semantic Parsing from the World's Response},
        Address = {Uppsala, Sweden},
	Year = {2010}}

@InProceedings{dale2012hoo,
  author    = {Dale, Robert  and  Anisimoff, Ilya  and  Narroway, George},
  title     = {{HOO 2012: A Report on the Preposition and Determiner Error Correction Shared Task}},
  booktitle = {Proceedings of the Seventh Workshop on Building Educational Applications Using NLP},
  month     = {June},
  year      = {2012},
  address   = {Montr\'{e}al, Canada},
  publisher = {Association for Computational Linguistics},
  pages     = {54--62},
  url       = {http://www.aclweb.org/anthology/W12-2006}
}

@InProceedings{pauls2012syntaxLM,
  author    = {Adam Pauls and Dan Klein},
  title     = {Large-Scale Syntactic Language Modeling with Treelets},
  booktitle = {Proceedings of ACL},
  address   = {Jeju Island, South Korea},
  month     = {July},
  year      = {2012},
  software  = {http://code.google.com/p/berkeleylm/},
}

@inproceedings{dahlmeier2012hoo,
 author = {Dahlmeier, Daniel and Ng, Hwee Tou and Ng, Eric Jun Feng},
 title = {NUS at the HOO 2012 shared task},
 booktitle = {Proceedings of the Seventh Workshop on Building Educational Applications Using NLP},
 year = {2012},
 location = {Montreal, Canada},
 pages = {216--224},
 numpages = {9},
 url = {http://dl.acm.org/citation.cfm?id=2390384.2390411},
 acmid = {2390411},
 publisher = {Association for Computational Linguistics},
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} 

[feedly mini] 

@inproceedings{goldwasser2011unsup,
	Author = {Dan Goldwasser and Roi Reichart and James Clarke and Dan Roth},
	Booktitle = {Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies},
	Pages = {1486--1495},
	Title = {Confidence Driven Unsupervised Semantic Parsing},
        Address = {Portland, Oregon},
	Year = {2011}}

@inproceedings{bioscope,
	Author = {Szarvas, Gy\"{o}rgy and Vincze, Veronika and Farkas, Rich\'{a}rd and Csirik, J\'{a}nos},
	Booktitle = {BioNLP '08: Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing},
	Pages = {38--45},
	Publisher = {Association for Computational Linguistics},
	Title = {{The BioScope corpus: annotation for negation, uncertainty and their scope in biomedical texts}},
	Year = {2008}}

@inproceedings{poon2010naacl,
	Author = {Hoifung Poon and Lucy Vanderwende},
	Booktitle = {Proceedings of the Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics},
	Pages = {813--821},
	Title = {Joint Inference for Knowledge Extraction from Biomedical Literature},
	Year = {2010}}

@inproceedings{dmcc2011event,
	Author = {David McClosky and Mihai Surdeanu and Christopher D. Manning},
	Booktitle = {Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies},
	Title = {Event extraction as Dependency Parsing},
	Year = {2011}}

@inproceedings{das2011pos,
	Author = {Dipanjan Das and Slav Petrov},
	Booktitle = {Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies},
	Title = {Unsupervised Part-of-Speech Tagging with Bilingual Graph-based Projections},
	Year = {2011}}

@article{rasmussen2009dpmm,
	Author = {Carl Rasmussen and Bernard de la Cruz and Zoubin Ghahramani and David Wild},
	Doi = {10.1109/TCBB.2007.70269},
	Issn = {1545-5963},
	Journal = {{IEEE/ACM} Transactions on Computational Biology and Bioinformatics},
	Number = {4},
	Pages = {615--628},
	Title = {Modeling and Visualizing Uncertainty in Gene Expression Clusters Using {D}irichlet Process Mixtures},
	Volume = {6},
	Year = {2009},
	Bdsk-Url-1 = {http://dx.doi.org/10.1109/TCBB.2007.70269}}

@inproceedings{andrzejewski09fdlda,
	Author = {Andrzejewski, David and Zhu, Xiaojin and Craven, Mark},
	Booktitle = {Proceedings of the 26th Annual International Conference on Machine Learning},
	Location = {Montreal, Quebec, Canada},
	Pages = {25--32},
	Title = {Incorporating domain knowledge into topic modeling via {D}irichlet Forest priors},
	Year = {2009}}

@inproceedings{fader2011reverb,
  title={Identifying relations for open information extraction},
  author={Fader, Anthony and Soderland, Stephen and Etzioni, Oren},
  booktitle={Proceedings of the 2011 Conference on Empirical Methods in Natural Language Processing},
  pages={1535--1545},
  year={2011},
 
}

@inproceedings{banko2007textrunner,
 author = {Banko, Michele and Cafarella, Michael J. and Soderland, Stephen and Broadhead, Matt and Etzioni, Oren},
 title = {Open information extraction from the web},
 booktitle = {Proceedings of the 20th International Joint Conference on Artifical Intelligence},
 year = {2007},
 pages = {2670--2676},
} 

@inproceedings{finkel09joint,
	Author = {Finkel, Jenny R. and Manning, Christopher D.},
	Booktitle = {Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics},
	Pages = {326--334},
	Title = {Joint Parsing and Named Entity Recognition},
	Year = {2009}}

@inproceedings{kork08gotal,
	Author = {Ioannis Korkontzelos and Ioannis Klapaftis and Suresh Manandhar},
	Booktitle = {Proceedings of the 6th International Conference on Natural Language Processing, GoTAL 2008},
	Month = {August},
	Pages = {248-259},
	Title = {Reviewing and Evaluating Automatic Term Recognition Techniques},
	Year = {2008}}

@inproceedings{nenadic04atr,
	Author = {Nenadic, Goran and Ananiadou, Sophia and McNaught, John},
	Booktitle = {COLING '04: Proceedings of the 20th international conference on Computational Linguistics},
	Location = {Geneva, Switzerland},
	Pages = {604-610},
	Title = {Enhancing automatic term recognition through recognition of variation},
	Year = {2004}}

@inproceedings{wermter05term,
	Author = {Joachim Wermter and Udo Hahn},
	Booktitle = {Discovery Science},
	Pages = {281-293},
	Title = {Massive Biomedical Term Discovery},
	Year = {2005}}

@inproceedings{christodoulopoulos2010pos,
	Author = {Christodoulopoulos, Christos and Goldwater, Sharon and Steedman, Mark},
	Booktitle = {Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing},
	Pages = {575--584},
	Title = {Two decades of unsupervised {POS} induction: how far have we come?},
	Year = {2010}}

@article{ganchev2010pr,
	Acmid = {1859918},
	Author = {Ganchev, Kuzman and Gra\c{c}a, Jo\~{a}o and Gillenwater, Jennifer and Taskar, Ben},
	Issn = {1532-4435},
	Issue_Date = {3/1/2010},
	Journal = {J. Mach. Learn. Res.},
	Month = {August},
	Numpages = {49},
	Pages = {2001--2049},
	Publisher = {JMLR.org},
	Title = {Posterior Regularization for Structured Latent Variable Models},
	Url = {http://portal.acm.org/citation.cfm?id=1756006.1859918},
	Volume = {11},
	Year = {2010},
	Bdsk-Url-1 = {http://portal.acm.org/citation.cfm?id=1756006.1859918}}

@inproceedings{berg2010unsup,
	Author = {Berg-Kirkpatrick, Taylor and Bouchard-C\^{o}t\'{e}, Alexandre and DeNero, John and Klein, Dan},
	Booktitle = {Proceedings of Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics},
	Pages = {582--590},
	Title = {Painless unsupervised learning with features},
	Year = {2010}}

@inproceedings{bagga1998bcubed,
	Acmid = {980859},
	Address = {Stroudsburg, PA, USA},
	Author = {Bagga, Amit and Baldwin, Breck},
	Booktitle = {Proceedings of the 17th international conference on Computational linguistics - Volume 1},
	Doi = {http://dx.doi.org/10.3115/980451.980859},
	Location = {Montreal, Quebec, Canada},
	Numpages = {7},
	Pages = {79--85},
	Publisher = {Association for Computational Linguistics},
	Series = {COLING '98},
	Title = {Entity-based cross-document coreferencing using the Vector Space Model},
	Url = {http://dx.doi.org/10.3115/980451.980859},
	Year = {1998},
	Bdsk-Url-1 = {http://dx.doi.org/10.3115/980451.980859}}

@article{niu2012elementary,
    author    = {Feng Niu and Ce Zhang and Christopher R\'e and Jude Shavlik},
    title     = {Elementary: Large-scale Knowledge-base Construction via Machine Learning and Statistical Inference},
    journal = {IJSWIS Special Issue on Web-Scale Knowledge Extraction},
    year      = {2012},
  }
  

@article{deemter00oncoreferring,
	Author = {Kees Van Deemter and Rodger Kibble},
	Journal = {Computational Linguistics},
	Pages = {629--637},
	Title = {On Coreferring: Coreference in MUC and Related Anotation Schemes},
	Volume = {26},
	Year = {2000}}

@inproceedings{mintz2009distant,
  title={Distant supervision for relation extraction without labeled data},
  author={Mintz, Mike and Bills, Steven and Snow, Rion and Jurafsky, Dan},
  booktitle={Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP},
  pages={1003--1011},
  year={2009},
}

@inproceedings{coen10cdistance,
	Author = {Michael H. Coen and M. Hidayath Ansari and Nathanael Fillmore},
	Booktitle = {ICML},
	Pages = {231-238},
	Title = {Comparing Clusterings in Space},
	Year = {2010}}

@article{amigo2009bcubed,
	Affiliation = {UNED Departamento de Lenguajes y Sistemas Inform{\'a}ticos Madrid Spain},
	Author = {Amig{\'o}, Enrique and Gonzalo, Julio and Artiles, Javier and Verdejo, Felisa},
	Issn = {1386-4564},
	Issue = {4},
	Journal = {Information Retrieval},
	Keyword = {Computer Science},
	Note = {10.1007/s10791-008-9066-8},
	Pages = {461-486},
	Publisher = {Springer Netherlands},
	Title = {A comparison of extrinsic clustering evaluation metrics based on formal constraints},
	Url = {http://dx.doi.org/10.1007/s10791-008-9066-8},
	Volume = {12},
	Year = {2009},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/s10791-008-9066-8}}

@inproceedings{manandhar2010semeval,
	Acmid = {1859675},
	Address = {Stroudsburg, PA, USA},
	Author = {Manandhar, Suresh and Klapaftis, Ioannis P. and Dligach, Dmitriy and Pradhan, Sameer S.},
	Booktitle = {Proceedings of the 5th International Workshop on Semantic Evaluation},
	Location = {Los Angeles, California},
	Numpages = {6},
	Pages = {63--68},
	Publisher = {Association for Computational Linguistics},
	Series = {SemEval '10},
	Title = {SemEval-2010 task 14: Word sense induction \& disambiguation},
	Url = {http://portal.acm.org/citation.cfm?id=1859664.1859675},
	Year = {2010},
	Bdsk-Url-1 = {http://portal.acm.org/citation.cfm?id=1859664.1859675}}

@inproceedings{liang11dcs,
	Author = {Percy Liang and Michael Jordan and Dan Klein},
	Booktitle = {Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies},
	Title = {Learning Dependency-Based Compositional Semantics},
	pages = {590--599},
        Address = {Portland, Oregon},
	Year = {2011}}

@inproceedings{bunt2012dialog,
  address = {Istanbul, Turkey},
  author = {Bunt, Harry and Alexandersson, Jan and Choe, Jae-Woong and Fang, Alex Chengyu and Hasida, Koiti and Petukhova, Volha and Popescu-Belis, Andrei and Traum, David},
  booktitle = {Proceedings of the Eight International Conference on Language Resources and Evaluation},
  title = {ISO 24617-2: A semantically-based standard for dialogue annotation},
  year = {2012}
}




@inproceedings{fung03hierarchicaldocument,
	Author = {Benjamin C. M. Fung and Ke Wang and Martin Ester},
	Booktitle = {Proceedings of SIAM International Conference on Data Mining},
	Pages = {59--70},
	Title = {Hierarchical Document Clustering Using Frequent Itemsets},
	Year = {2003}}

@inproceedings{liang09measurements,
	Author = {Percy Liang and Michael I. Jordan and Dan Klein},
	Booktitle = {Proceedings of the 26th International Conference on Machine Learning},
	Location = {Montreal, Quebec, Canada},
	Pages = {641--648},
	Title = {Learning from Measurements in Exponential Families},
	Year = {2009}}

@book{KampReyle93drt,
  author = {Hans Kamp and Uwe Reyle},
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                  Logic and Discourse Representation Theory},
  publisher = {Kluwer},
  year = {1993},
  address = {Dordrecht}
}



@inproceedings{liang09semantics,
	Author = {Percy Liang and Michael I. Jordan and Dan Klein},
	Booktitle = {Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP},
	Title = {Learning Semantic Correspondences with Less Supervision},
	address = {Singapore},
	pages = {91--99},
	Year = {2009}}

@inproceedings{snow08mturk,
	Author = {Snow, Rion and O'Connor, Brendan and Jurafsky, Daniel and Ng, Andrew},
	Booktitle = {Proceedings of the 2008 Conference on Empirical Methods in Natural Language Processing},
	Pages = {254--263},
	Title = {{Cheap and Fast -- But is it Good? Evaluating Non-Expert Annotations for Natural Language Tasks}},
	Year = {2008}}

@techreport{zhao01criterionfunctions,
	Author = {Ying Zhao and George Karypis},
	Institution = {Department of Computer Science, University of Minnesota},
	Number = {TR 01-40},
	Title = {Criterion Functions for Document Clustering: Experiments and Analysis},
	Year = {2001}}

@inproceedings{riedel08improving,
	Author = {Sebastian Riedel},
	Booktitle = {Proceedings of the 24th Conference on Uncertainty in Artificial Intelligence},
	Pages = {468-475},
	Title = {{Improving the Accuracy and Efficiency of MAP Inference for Markov Logic}},
	Year = {2008}}

@inproceedings{tishby99ib,
	Author = {Naftali Tishby and Fernando Pereira and William Bialek},
	Booktitle = {Proceedings of the 37-th Annual Allerton Conference on Communication, Control and Computing},
	Pages = {368--377},
	Title = {The Information Bottleneck Method},
	Year = {1999}}

@article{fritsch09dpmsum,
	Author = {Arno Fritsch And Katja Ickstadt},
	Journal = {Bayesian analysis},
	Keywords = {clustering, dirichlet, mixture, model, process, summarize},
	Number = {2},
	Pages = {191--412},
	Title = {Improved Criteria for Clustering Based on the Posterior Similarity Matrix},
	Volume = {4},
	Year = {2009}}

@inproceedings{daume09unsearn,
	Author = {Hal {Daum\'e III}},
	Booktitle = {Proceedings of the 26th International Conference on Machine Learning},
	Pages = {209--216},
	Title = {Unsupervised Search-based Structured Prediction},
	Year = {2009}}

@phdthesis{daume2006thesis,
	Address = {Los Angeles, CA},
	Author = {Hal {Daum\'e III}},
	Keywords = {sp nlp ml},
	Month = {August},
	School = {University of Southern California},
	Title = {Practical Structured Learning Techniques for Natural Language Processing},
	Url = {http://pub.hal3.name/#daume06thesis},
	Year = {2006},
	Bdsk-Url-1 = {http://pub.hal3.name/#daume06thesis}}

@inproceedings{settles08emnlp,
	Author = {B. Settles and M. Craven},
	Booktitle = {Proceedings of the Conference on Empirical Methods in Natural Language Processing},
	Pages = {1069--1078},
	Title = {An Analysis of Active Learning Strategies for Sequence Labeling Tasks},
	Year = {2008}}

@inproceedings{druck08ge,
	Author = {Druck, Gregory and Mann, Gideon and McCallum, Andrew},
	Booktitle = {{Proceedings of the 31st Annual International ACM SIGIR Conference on research and development in Information Retrieval}},
	Location = {Singapore, Singapore},
	Pages = {595--602},
	Title = {Learning from labeled features using generalized expectation criteria},
	Year = {2008}}

@INPROCEEDINGS{mann2008generalizedExpectation,
    author = {Gideon S. Mann and Andrew Mccallum},
    title = {Generalized expectation criteria for semi-supervised learning of conditional random fields},
    booktitle = {Proceedings of the 46th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies},
    pages = {870 - 878},
    year = {2008}
}

@inproceedings{riedel09markov,
	Author = {Sebastian Riedel and Hong-Woo Chun and Toshihisa Takagi and Jun'ichi Tsujii},
	Booktitle = {Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task},
	Pages = {41--49},
	Title = {A {M}arkov Logic Approach to Bio-Molecular Event Extraction},
	Year = {2009}}

@article{minnen01,
	Author = {Guido Minnen and John Carroll and Darren Pearce},
	Journal = {Natural Language Engineering},
	Number = {3},
	Pages = {207--223},
	Title = {Applied morphological processing of {English}},
	Volume = {7},
	Year = {2001}}

@inproceedings{schuman06heuristics,
	Author = {Schuman, Jonathan and Bergler, Sabine},
	Booktitle = {Proceedings of the Workshop on Linking Natural Language Processing and Biology},
	Location = {New York City, New York},
	Pages = {82--89},
	Title = {Postnominal prepositional phrase attachment in proteomics},
	Year = {2006}}

@book{clr90,
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	Publisher = {{MIT} Press},
	Title = {Introduction to Algorithms},
	Year = {1990}}

@inproceedings{bjorne09sharedtask,
	Author = {Bjorne, Jari and Heimonen, Juho and Ginter, Filip and Airola,Antti and Pahikkala, Tapio and Salakoski, Tapio},
	Booktitle = {Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task},
	Pages = {10--18},
	Title = {Extracting Complex Biological Events with Rich Graph-Based Feature Sets},
	Year = {2009}}

@inproceedings{buyko09sharedtask,
	Author = {Buyko, Ekaterina and Faessler, Erik and Wermter, Joachim and Hahn, Udo},
	Booktitle = {Proceedings of the BioNLP'09 Shared Task on Event Extraction},
	Location = {Boulder, Colorado},
	Pages = {19--27},
	Title = {Event Extraction from Trimmed Dependency Graphs},
	Year = {2009}}

@inproceedings{agichtein00snowball,
	Address = {San Antonio, TX, USA},
	Author = {Eugene Agichtein and Luis Gravano},
	Booktitle = {Proceedings of the Fifth {ACM} International Conference on Digital Libraries},
	Pages = {85-94},
	Publisher = {Association for Computing Machinery},
	Title = {Snowball: Extracting Relations from Large Plain-Text Collections},
	Year = {2000}}

@book{tm2006ana,
	Address = {Norwood, MA, USA},
	Author = {Sophia Ananiadou and John Mcnaught},
	Publisher = {Artech House, Inc.},
	Title = {Text Mining for Biology And Biomedicine},
	Year = {2005}}

@inproceedings{ando05aso,
	Author = {Ando, Rie and Zhang, Tong},
	Booktitle = {Proceedings of the 43rd Annual Meeting of the Association for Computational Linguistics},
	Location = {Ann Arbor, Michigan},
	Pages = {1--9},
	Publisher = {Association for Computational Linguistics},
	Title = {A High-Performance Semi-Supervised Learning Method for Text Chunking},
	Year = {2005}}

@inproceedings{ando07biocreative,
	Author = {Rie Kubota Ando},
	Booktitle = {Proceedings of the Second BioCreAtIvE Challenge Evaluation Workshop},
	Title = {{BioCreAtIvE II Gene Mention Tagging System at IBM Watson}},
	Year = {2007}}

@article{antoniak74dp,
	Author = {Charles E. Antoniak},
	Journal = {The Annals of Statistics},
	Number = {6},
	Pages = {1152--1174},
	Title = {{Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems}},
	Volume = {2},
	Year = {1974}}

@article{argamonengelson99committeebased,
	Author = {Shlomo Argamon-Engelson and Ido Dagan},
	Journal = {Journal of Artificial Intelligence Research},
	Pages = {335--360},
	Title = {Committee-Based Sample Selection for Probabilistic Classifiers},
	Volume = {11},
	Year = {1999}}

@inproceedings{baldridge2003conll,
	Author = {Jason Baldridge and Miles Osborne},
	Booktitle = {Proceedings of CoNLL-2003},
	Editor = {Walter Daelemans and Miles Osborne},
	Pages = {17--24},
	Publisher = {Edmonton, Canada},
	Title = {Active learning for {HPSG} parse selection},
	Year = {2003}}

@article{baldridge07activeLOP,
	Author = {Jason Baldridge and Miles Osborne},
	Journal = {Natural Language Engineering},
	Number = {1},
	Pages = {1--32},
	Title = {Active Learning and Logarithmic Opinion Pools for {HPSG} Parse Selection},
	Volume = {13},
	Year = {2007}}

@inproceedings{osborne04emnlp,
	Author = {Jason Baldridge and Miles Osborne},
	Booktitle = {Proceedings of the 2004 Conference on Empirical Methods in Natural Language Processing},
	Location = {Barcelona, Spain},
	Month = {July},
	Pages = {9-16},
	Title = {Active Learning and the Total Cost of Annotation},
	Year = {2004}}

@inproceedings{banko01,
	Author = {M Banko and E. Brill},
	Bibsource = {DBLP, http://dblp.uni-trier.de},
	Booktitle = {ACL},
	Ee = {http://www.aclweb.org/anthology/P01-1005},
	Pages = {26-33},
	Title = {Scaling to Very Very Large Corpora for Natural Language Disambiguation},
	Year = {2001}}

@article{baram04online,
	Address = {Cambridge, MA, USA},
	Author = {Yoram Baram and Ran El-Yaniv and Kobi Luz},
	Issn = {1533-7928},
	Journal = {Journal of Machine Learning Research},
	Pages = {255--291},
	Publisher = {MIT Press},
	Title = {Online Choice of Active Learning Algorithms},
	Volume = {5},
	Year = {2004}}

@incollection{basu06clust,
	Author = {Sugato Basu and Mikhail Bilenko and Arindam Banerjee and Raymond J. Mooney},
	Booktitle = {Semi-Supervised Learning},
	Editor = {O. Chapelle and B. Schoelkopf and A. Zien},
	Pages = {73-102},
	Publisher = {MIT Press},
	Title = {Probabilistic Semi-Supervised Clustering with Constraints},
	Year = {2006}}

@inproceedings{bradski06mapreduce,
	Abstract = {<p>We are at the beginning of the multicore era. Computers will have increasingly<br />many cores (processors), but there is still no good programming framework for<br />these architectures, and thus no simple and unified way for machine learning to<br />take advantage of the potential speed up. In this paper, we develop a broadly ap-<br />plicable parallel programming method, one that is easily applied to many different<br />learning algorithms. Our work is in distinct contrast to the tradition in machine<br />learning of designing (often ingenious) ways to speed up a single algorithm at a<br />time. Specifically, we show that algorithms that fit the Statistical Query model [15]<br />can be written in a certain {\textquotedblleft}summation form,{\textquotedblright} which allows them to be easily par-<br />allelized on multicore computers. We adapt Google{\textquoteright}s map-reduce [7] paradigm to<br />demonstrate this parallel speed up technique on a variety of learning algorithms<br />including locally weighted linear regression (LWLR), k-means, logistic regres-<br />sion (LR), naive Bayes (NB), SVM, ICA, PCA, gaussian discriminant analysis<br />(GDA), EM, and backpropagation (NN). Our experimental results show basically<br />linear speedup with an increasing number of processors.</p>},
	Author = {Gary Bradski and Cheng-Tao Chu and Andrew Ng and Kunle Olukotun and Sang Kyun Kim and Yi-An Lin and YuanYuan Yu},
	Booktitle = {NIPS},
	Title = {Map-Reduce for Machine Learning on Multicore},
	Year = {2006}}

@article{beal_infinite_2002,
	Author = {M. J. Beal and Z. Ghahramani and C. E. Rasmussen},
	Comment = {Introduces the hidden Markov model with an infinite number of states and potentially an infinite emission alphabet. The authors introduce the {iHmm} using a coupled set of urn models and describe an approximate sampler for inference. The {HDP-HMM} based on the Bayesian Hierarchical {DP} builds on this work and introduces an exact sampler for (almost) the same model.},
	Date-Modified = {2010-04-24 18:51:39 -0500},
	Journal = {Proceedings of the Sixteenth Annual Conference on Neural Information Processing Systems},
	Keywords = {{iHMM}},
	Pages = {577 -- 584},
	Title = {{The Infinite Hidden Markov Model}},
	Volume = {14},
	Year = {2002}}

@inproceedings{becker05bootstrap,
	Author = {M. Becker and B. Hachey and B. Alex and C. Grover},
	Booktitle = {Proceedings of the Workshop on Learning with Multiple Views, ICML},
	Title = {Optimising Selective Sampling for Bootstrapping Named Entity Recognition},
	Year = {2005}}

@inproceedings{becker05al,
	Address = {Edinburgh, Scotland},
	Author = {Markus Becker and Miles Osborne},
	Booktitle = {Proceedings of the Nineteenth International Joint Conference on Artificial Intelligence},
	Pages = {991-996},
	Title = {A Two-Stage Method for Active Learning of Statistical Grammars},
	Year = {2005}}

@techreport{beis95ptb2,
	Author = {Ann Beis and Mark Ferguson and Karen Katz and Robert MacIntyre},
	Institution = {University of Pennsylvania},
	Owner = {andreas},
	Timestamp = {2009.10.09},
	Title = {Bracketing guidelines for Treebank {II} style: {P}enn {T}ree{B}ank {P}roject},
	Year = {1995}}

@article{berger96maximum,
	Author = {Adam L. Berger and Stephen Della Pietra and Vincent J. Della Pietra},
	Journal = {Computational Linguistics},
	Number = {1},
	Pages = {39-71},
	Title = {A Maximum Entropy Approach to Natural Language Processing},
	Volume = {22},
	Year = {1996}}

@inproceedings{biemann07ranlp,
	Author = {Chris Biemann and Claudio Giuliano and Alfio Gliozzo},
	Booktitle = {Proceedings of the International Conference in Recent Advances in Natural Language Processing},
	Title = {Unsupervised Part-Of-Speech Tagging Supporting Supervised Methods},
	Year = {2007}}
	


@inproceedings{daume09typpos,
	Author = {Adam R. Teichert and Hal {Daum\'e III}},
	Booktitle = {NIPS Workshop on Grammar Induction, Representation of Language and Language Learning},
	Title = {Unsupervised Part of Speech Tagging Without a Lexicon},
	Year = {2009}}

@inproceedings{biemann2006pos,
	Author = {Biemann, Chris},
	Booktitle = {Proceedings of the 21st International Conference on Computational Linguistics and 44th Annual Meeting of the Association for Computational Linguistics: Student Research Workshop},
	Pages = {7--12},
	Title = {Unsupervised part-of-speech tagging employing efficient graph clustering},
	Year = {2006}}

@article{bikel04parser,
	Author = {Bikel, Daniel M.},
	Date-Added = {2009-09-27 15:57:56 +0100},
	Date-Modified = {2009-09-27 16:02:11 +0100},
	Journal = {Computational Linguistics},
	Number = {4},
	Pages = {479-511},
	Title = {Intricacies of {C}ollins' parsing model},
	Volume = {30},
	Year = {2004}}

@inproceedings{blei08slda,
	Author = {Blei, David and Mcauliffe, Jon},
	Booktitle = {Proceedings of the 22nd Annual Conference on Neural Information Processing Systems},
	Title = {Supervised Topic Models},
	Year = {2008}}

@article{blei06variational,
	Author = {David M. Blei and Michael I. Jordan},
	Journal = {Journal of Bayesian Analysis},
	Number = {1},
	Pages = {121-144},
	Title = {Variational {I}nference for {D}irichlet {P}rocess {M}ixtures},
	Volume = {1},
	Year = {2006}}

@inproceedings{blitzer07biographies,
	Address = {Prague, Czech Republic},
	Author = {John Blitzer and Mark Dredze and Fernando Pereira},
	Booktitle = {Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics},
	Pages = {440--447},
	Publisher = {Association for Computational Linguistics},
	Title = {Biographies, Bollywood, Boom-boxes and Blenders: Domain Adaptation for Sentiment Classification},
	Year = {2007}}

@inproceedings{crammer2009cwmulti,
  title={Multi-class confidence weighted algorithms},
  author={Crammer, Koby and Dredze, Mark and Kulesza, Alex},
  booktitle={Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing: Volume 2-Volume 2},
  pages={496--504},
  year={2009},
  organization={Association for Computational Linguistics}
}


@inproceedings{blitzer06domain,
	Address = {Sydney, Australia},
	Author = {Blitzer, John and McDonald, Ryan and Pereira, Fernando},
	Booktitle = {Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing},
	Month = {July},
	Pages = {120--128},
	Publisher = {Association for Computational Linguistics},
	Title = {Domain Adaptation with Structural Correspondence Learning},
	Year = {2006}}

@inproceedings{mcdonald2005emnlp,
	Author = {McDonald, Ryan and Pereira, Fernando and Ribarov, Kiril and Hajic, Jan},
	Booktitle = {Proceedings of Human Language Technology Conference and Conference on Empirical Methods in Natural Language Processing},
	Pages = {523--530},
	Title = {Non-Projective Dependency Parsing using Spanning Tree Algorithms},
	Year = {2005}}

@article{bloom70filters,
	Author = {Bloom, Burton H.},
	Journal = {Communications of the ACM},
	Pages = {422--426},
	Title = {Space/time trade-offs in hash coding with allowable errors},
	Volume = {13},
	Year = {1970}}

@inproceedings{blum98combining,
	Author = {Avrim Blum and Tom Mitchell},
	Booktitle = {Proceedings of {COLT} 1998},
	Title = {Combining Labeled and Unlabeled Data with Co-training},
	Url = {citeseer.ist.psu.edu/blum98combining.html},
	Year = {1998},
	Bdsk-Url-1 = {citeseer.ist.psu.edu/blum98combining.html}}

@article{boguraev87lexicon,
	Address = {Cambridge, MA, USA},
	Author = {Bran Boguraev and Ted Briscoe},
	Issn = {0891-2017},
	Journal = {Computational Linguistics},
	Number = {3-4},
	Pages = {203--218},
	Publisher = {MIT Press},
	Title = {Large lexicons for natural language processing: utilising the grammar coding system of {LDOCE}},
	Volume = {13},
	Year = {1987}}

@inproceedings{li08verb,
	Author = {Li, Jianguo and Brew, Chris},
	Booktitle = {Proceedings of the 46th Annual Meeting of the Association of Computational Linguistics: Human Language Technologies},
	Location = {Columbus, Ohio},
	Pages = {434--442},
	Title = {Which Are the Best Features for Automatic Verb Classification},
	Year = {2008}}

@inproceedings{sun09verb,
	Author = {Sun, Lin and Korhonen, Anna},
	Booktitle = {Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing},
	Location = {Singapore},
	Month = {August},
	Pages = {638--647},
	Title = {Improving Verb Clustering with Automatically Acquired Selectional Preferences},
	Year = {2009}}

@techreport{luxburg06spectral,
	Author = {von Luxburg, Ulrike},
	Institution = {Max Plank Institute for Biological Cybernetics},
	Month = {August},
	Number = {TR-149},
	Title = {A tutorial on spectral clustering},
	Year = {2006}}

@inproceedings{cohn09naacl,
	Author = {Cohn, Trevor and Goldwater, Sharon and Blunsom, Phil},
	Booktitle = {Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics},
	Location = {Boulder, Colorado},
	Pages = {548--556},
	Title = {Inducing Compact but Accurate Tree-Substitution Grammars},
	Year = {2009}}

@inproceedings{brew02spectral,
	Author = {Chris Brew and Sabine {Schulte im Walde}},
	Booktitle = {Proceedings of the 2002 Conference on Empirical Methods in Natural Language Processing},
	Location = {Philadelphia, PA},
	Pages = {117--124},
	Title = {Spectral {C}lustering for {G}erman {V}erbs},
	Year = {2002}}

@phdthesis{korhonen2002phd,
	Author = {Anna Korhonen},
	School = {University of Cambridge},
	Title = {Subcategorization acqusition},
	Year = {2002}}

@inproceedings{brill94pos,
	Author = {Brill, Eric},
	Booktitle = {National Conference on Artificial Intelligence},
	Pages = {722--727},
	Title = {Some Advances in Transformation-Based Part of Speech Tagging},
	Year = {1994}}

@inproceedings{briscoe02rasp,
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@inproceedings{briscoe97subcat,
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@inproceedings{briscoe06rasp,
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	Year = {2006}}

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  year      = {2013},
  address   = {Seattle, WA},
  pages     = {193--203},
}


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@inproceedings{culotta04confidence,
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@inproceedings{curran03investigating,
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 title = {Wide-Coverage Semantic Representations from a {CCG} Parser},
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 pages = {1240--1246},
 address = {Geneva, Switzerland},
 year = {2004},
} 

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@phdthesis{dang04phd,
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	Author = {Hoa Trang Dang},
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	Publisher = {University of Pennsylvania},
	School = {University of Pennsylvania},
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	Year = {2004}}

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@inproceedings{dean04map,
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@inproceedings{dickinson03detecting,
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@inproceedings{finkel04bionlp,
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	Booktitle = {Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications},
	Location = {Geneva, Switzerland},
	Pages = {88--91},
	Title = {Exploiting context for biomedical entity recognition: from syntax to the web},
	Year = {2004}}

@article{dingare04compare,
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	Journal = {Computational Functional Genomics},
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	Year = {2005}}

@inproceedings{ACE04,
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	Year = {2004}}

@techreport{dom01q0,
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	Year = {2001}}

@article{so,
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	Year = {2005}}

@inproceedings{finkel07itree,
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	Pages = {272--279},
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	Year = {2003}}

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@inproceedings{van_gael_beam_2008,
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	algorithm for the infinite Hidden Markov model called beam sampling.
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	states considered at each time step to a finite number, with dynamic
	programming, which samples whole state trajectories efficiently.
	Our algorithm typically outperforms the Gibbs sampler and is more
	robust. We present applications of {iHMM} inference using the beam
	sampler on changepoint detection and text prediction problems.},
	Address = {Helsinki},
	Author = {J. Van Gael and Y. Saatci and Y. W. Teh and Z. Ghahramani},
	Booktitle = {Proceedings of the 25th International Conference on Machine learning},
	Title = {{Beam Sampling for the Infinite Hidden Markov Model}},
	Year = {2008}}

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	Year = {2003}}

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	Title = {{P}enn/{U}mass/{CHOP} {B}iocreative{II} Systems},
	Year = {2007}}

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	Publisher = {Edmonton, Canada},
	Title = {Early results for Named Entity Recognition with Conditional Random Fields, Feature Induction and Web-Enhanced Lexicons},
	Year = {2003}}

@inproceedings{gao08emnlp,
	Author = {Gao, Jianfeng and Johnson, Mark},
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	Pages = {344-352},
	Title = {{A comparison of Bayesian estimators for unsupervised hidden Markov model POS taggers}},
	Year = {2008}}

@inproceedings{gasperin2006bionlp,
	Author = {Gasperin, Caroline},
	Booktitle = {Proceedings of the BioNLP Workshop on Linking Natural Language and Biology},
	Location = {New York, New York},
	Pages = {96--103},
	Title = {Semi-supervised anaphora resolution in biomedical texts},
	Year = {2006}}

@inproceedings{gasperin2007daarc,
	Author = {Caroline Gasperin and Nikiforos Karamanis and Ruth Seal},
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	Year = {2007}}

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	Publisher = {American Statistical Association},
	Title = {{Large-scale Bayesian Logistic Regression for Text Classification}},
	Volume = {49},
	Year = {2006}}

@incollection{zoubin00vi,
	Author = {Ghahramani, Zoubin and Beal, Matthew J.},
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	Editor = {Saad and Opper},
	Publisher = {MIT Press},
	Title = {Graphical models and variational methods},
	Year = {2000}}

@article{zoubin07ibp2,
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	Journal = {Bayesian Statistics},
	Pages = {201-226},
	Title = {{Bayesian nonparametric latent feature models}},
	Volume = {8},
	Year = {2007}}

@inproceedings{gold07bayespos,
	Author = {Goldwater, Sharon and Griffiths, Tom},
	Booktitle = {Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics},
	Pages = {744--751},
	Title = {{A fully Bayesian approach to unsupervised part-of-speech tagging}},
	Year = {2007}}

@article{goldwater_interpolating_2006,
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	Date-Modified = {2010-04-24 18:50:34 -0500},
	Journal = {Proceedings of the Twentieth Annual Conference on Neural Information Processing Systems},
	Keywords = {{Language,NPBayes}},
	Pages = {459},
	Title = {Interpolating between types and tokens by estimating power-law generators},
	Volume = {18},
	Year = {2006}}

@phdthesis{sharon07phd,
	Address = {Providence, RI, USA},
	Author = {Sharon J. Goldwater},
	Isbn = {978-0-549-11904-3},
	Order_No = {AAI3271977},
	Publisher = {Brown University},
	School = {Brown University},
	Title = {Nonparametric bayesian models of lexical acquisition},
	Year = {2007}}

@techreport{zoubin05ibp,
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	Institution = {Gatsby Computational Neuroscience Unit},
	Title = {Infinite Latent Feature Models and the Indian Buffet Process},
	Year = {2005}}

@InProceedings{ji2011kbp,
 author = {Heng Ji and Ralph Grishman and Hoa Trang Dang},
 title = {{An Overview of the TAC2011 Knowledge Base Population Track}},
 booktitle = {Proceedings of the 2011 Text Analysis Conference},
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 OPTabstract = {},
 OPTkeywords = {},
}


@inproceedings{grishman94comlex,
	Author = {Ralph Grishman and Catherine Macleod and Adam Meyers},
	Booktitle = {Proceedings of the 15th International Conference on Computational Linguistics},
	Pages = {268-272},
	Title = {Complex Syntax: Building a Computational Lexicon},
	Year = {1994}}

@inproceedings{hachey2005conll,
	Author = {Hachey, Ben and Alex, Beatrice and Becker, Markus},
	Booktitle = {Proceedings of the Ninth Conference on Computational Natural Language Learning},
	Location = {Ann Arbor, Michigan},
	Pages = {144--151},
	Title = {Investigating the Effects of Selective Sampling on the Annotation Task},
	Year = {2005}}

@inproceedings{ravi2009minimized,
	Author = {Sujith Ravi and Kevin Knight},
	Booktitle = {Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP},
	Pages = {504-512},
	Title = {Minimized Models for Unsupervised Part-of-Speech Tagging},
	Year = {2009}}

@inproceedings{walker02darpa,
	Author = {Marilyn A. Walker and Alexander I. Rudnicky and Rashmi Prasad and John S. Aberdeen and Elizabeth Owen Bratt and John S. Garofolo and Helen Wright Hastie and Audrey N. Le and Bryan L. Pellom and Alexandros Potamianos and Rebecca J. Passonneau and Salim Roukos and Gregory A. Sanders and Stephanie Seneff and David Stallard},
	Booktitle = {Proceedings of the 7th International Conference on Spoken Language Processing},
	Title = {{DARPA} communicator: cross-system results for the 2001 evaluation},
	Year = {2002}}

@inproceedings{artzi11emnlp,
	Author = {Artzi, Yoav and Zettlemoyer, Luke},
	Booktitle = {Proceedings of the 2011 Conference on Empirical Methods in Natural Language Processing},
	Pages = {421--432},
	Title = {Bootstrapping Semantic Parsers from Conversations},
        Address = {Edinburgh, UK},
	Year = {2011}}

@inproceedings{schwarz2011acl,
	Author = {Roy Schwartz and Omri Abend and Roi Reichart and Ari Rappoport},
	Booktitle = {Proceedings of the 49th Annual Meeting of the Association of Computational Linguistics},
	Title = {Neutralizing Linguistically Problematic Annotations in Unsupervised Dependency Parsing Evaluation},
	Year = {2011}}

@inproceedings{haghighi07dpanaphora,
	Author = {Haghighi, Aria and Klein, Dan},
	Booktitle = {Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics},
	Location = {Prague, Czech Republic},
	Pages = {848--855},
	Title = {{Unsupervised Coreference Resolution in a Nonparametric Bayesian Model}},
	Year = {2007}}

@inproceedings{haghighi06proto,
	Author = {Haghighi, Aria and Klein, Dan},
	Booktitle = {Proceedings of Human Language Technology Conference of the North American Chapter of the Association of Computational Linguistics},
	Location = {New York, New York},
	Pages = {320--327},
	Title = {Prototype-driven learning for sequence models},
	Year = {2006}}

@inproceedings{haghighi2009anaphora,
	Author = {Haghighi, Aria and Klein, Dan},
	Booktitle = {Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing},
	Pages = {1152--1161},
	Title = {{Simple Coreference Resolution with Rich Syntactic and Semantic Features}},
	Year = {2009}}

@inproceedings{haghighi2005conll,
	Author = {Aria Haghighi and Kristina Toutanova and Chris Manning},
	Booktitle = {Proceedings of CoNLL-2005: Shared Task},
	Title = {A {J}oint {M}odel for {S}emantic {R}ole {L}abeling},
	Year = {2005}}

@inproceedings{heller05hdpm,
	Author = {Heller, Katherine A. and Ghahramani, Zoubin},
	Booktitle = {Proceedings of the 22nd International Conference on Machine Learning},
	Pages = {297--304},
	Title = {Bayesian hierarchical clustering},
	Year = {2005}}

@article{biocreative04task1b,
	Author = {Lynette Hirschman and Marc Colosimo and Alexander Morgan and Alexander Yeh},
	Journal = {BMC Bioinformatics},
	Month = {May},
	Pages = {S11},
	Title = {Overview of {BioCreAtIvE task 1B}: normalized gene lists},
	Volume = {6 (Suppl 1)},
	Year = {2005}}

@article{hirschmanPTWW02,
	Author = {Lynette Hirschman and Jong C. Park and Jun'ichi Tsujii and Limsoon Wong and Cathy H. Wu},
	Bibsource = {DBLP, http://dblp.uni-trier.de},
	Journal = {Bioinformatics},
	Number = {12},
	Pages = {1553-1561},
	Title = {Accomplishments and challenges in literature data mining for biology},
	Volume = {18},
	Year = {2002}}

@article{biocreative04,
	Author = {Hirschman, Lynette and Yeh, Alexander and Blaschke, Christian and Valencia, Alfonso},
	Journal = {BMC Bioinformatics},
	Pages = {S1},
	Title = {Overview of {BioCreAtIvE}: critical assessment of information extraction for biology},
	Volume = {6 (Suppl 1)},
	Year = {2005}}

@article{hoyer04nmf,
	Address = {Cambridge, MA, USA},
	Author = {Patrik O. Hoyer},
	Issn = {1533-7928},
	Journal = {Journal of Machine Learning Research},
	Pages = {1457--1469},
	Publisher = {MIT Press},
	Title = {Non-negative Matrix Factorization with Sparseness Constraints},
	Volume = {5},
	Year = {2004}}

@article{hsu02comparison,
	Author = {Hsu, Chih-Wei and Lin, Chih-Jen},
	Citeulike-Article-Id = {431014},
	Journal = {IEEE Transactions on Neural Networks},
	Keywords = {multiclass svm},
	Number = {2},
	Pages = {415--425},
	Priority = {3},
	Title = {A comparison of methods for multiclass support vector machines},
	Volume = {13},
	Year = {2002}}

@inproceedings{thomas00bioie,
	Author = {J. Thomas and D. Milward and C. Ouzounis and S. Pulman},
	Booktitle = {Proceedings of the Pacific Symposium in Biocomputing},
	Pages = {538-549},
	Title = {Automatic extraction of protein interactions from scientific abstracts},
	Year = {2000}}

@article{hobbs02bioie,
	Author = {Hobbs, Jerry R.},
	Journal = {Journal of Biomedical Informatics},
	Number = {4},
	Pages = {260--264},
	Title = {Information extraction from biomedical text},
	Volume = {35},
	Year = {2002}}

@article{humphreys00bioie,
	Author = {Humphreys, Kevin and Demetriou, George and Gaizauskas, Robert},
	Journal = {Journal of Information Science},
	Month = {April},
	Number = {2},
	Pages = {75--85},
	Posted-At = {2009-10-04 23:11:57},
	Priority = {2},
	Title = {Bioinformatics applications of information extraction from scientific journal articles},
	Volume = {26},
	Year = {2000}}

@incollection{joachims98making,
	Author = {Thorsten Joachims},
	Booktitle = {Advances in Kernel Methods: Support Vector Machines},
	Editor = {B. Sch{\"o}lkopf, C. Burges, A. Smola},
	Publisher = {MIT Press, Cambridge, MA},
	Title = {Making large-scale support vector machine learning practical},
	Year = {1998}}

@inproceedings{joachims98text,
	Author = {Thorsten Joachims},
	Booktitle = {Proceedings of the 10th European Conference on Machine Learning},
	Month = {April},
	Pages = {137--142},
	Publisher = {Springer},
	Series = {Lecture Notes in Computer Science},
	Title = {Text categorization with support vector machines: learning with many relevant features},
	Year = {1998}}

@inproceedings{johnson07emnlp,
	Author = {Johnson, Mark},
	Booktitle = {Proceedings of the 2007 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning},
	Pages = {296--305},
	Title = {{Why Doesn't EM Find Good HMM POS-Taggers?}},
	Year = {2007}}

@article{baum1970,
	Author = {Baum, Leonard E. and Petrie, Ted and Soules, George and Weiss, Norman},
	Doi = {10.2307/2239727},
	Journal = {The Annals of Mathematical Statistics},
	Number = {1},
	Pages = {164--171},
	Title = {{A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains}},
	Volume = {41},
	Year = {1970},
	Bdsk-Url-1 = {http://dx.doi.org/10.2307/2239727}}

@article{kano2009ucomapre,
	Author = {Yoshinobu Kano and William Baumgartner and Luke McCrohon and Sophia Ananiadou and Kevin Cohen and Larry Hunter and Jun'ichi Tsujii},
	Journal = {Bioinformatics},
	Number = {15},
	Pages = {1997-1998},
	Title = {U-Compare: share and compare text mining tools with {UIMA}},
	Volume = {25},
	Year = {2009}}

@inproceedings{karamanis07psb,
	Author = {Karamanis, Nikiforos and Lewin, Ian and Seal, Ruth and Drysdale, Rachel and Briscoe, Ted},
	Booktitle = {Proceedings of the Pacific Symposium in Biocomputing},
	Pages = {245-256},
	Title = {Integrating Natural Language Processing with {FlyBase} curation},
	Year = {2007}}

@article{karamanis08bmc,
	Author = {Karamanis, Nikiforos and Seal, Ruth and Lewin, Ian and McQuilton, Peter and Vlachos, Andreas and Gasperin, Caroline and Drysdale, Rachel and Briscoe, Ted},
	Journal = {BMC Bioinformatics},
	Pages = {193},
	Title = {Natural Language Processing in aid of {FlyBase} curators},
	Volume = {9},
	Year = {2008}}

@article{keerthi03gauss,
	Author = {S. Sathiya Keerthi and Chih-Jen Lin},
	Journal = {Neural Computation},
	Number = {7},
	Pages = {1667--1689},
	Title = {Asymptotic behaviors of support vector machines with {G}aussian kernel},
	Volume = {15},
	Year = {2003}}

@inproceedings{kemp06irm,
	Author = {Kemp, C. and Tenenbaum, J. B. and Griffiths, T. L. and Yamada, T. and Ueda, N.},
	Booktitle = {Proceedings of the Twenty-First National Conference on Artificial Intelligence},
	Title = {Learning systems of concepts with an infinite relational model.},
	Year = {2006}}

@inproceedings{kilicoglu2009bionlp,
	Author = {Kilicoglu, Halil and Bergler, Sabine},
	Booktitle = {Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task},
	Location = {Boulder, Colorado},
	Pages = {119--127},
	Title = {Syntactic Dependency Based Heuristics for Biological Event Extraction},
	Year = {2009}}

@inproceedings{kim2009bionlp,
	Author = {Kim, Jin-Dong and Ohta, Tomoko and Pyysalo, Sampo and Kano, Yoshinobu and Tsujii, Jun'ichi},
	Booktitle = {Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task},
	Location = {Boulder, Colorado},
	Pages = {1--9},
	Title = {Overview of {BioNLP'09} Shared Task on Event Extraction},
	Year = {2009}}

@inproceedings{genia,
	Author = {Jin-Dong Kim and Tomoko Ohta and Yuka Tateisi and Jun'ichi Tsujii},
	Booktitle = {Bioinformatics},
	Pages = {180-182},
	Title = {{GENIA} corpus - a semantically annotated corpus for bio-textmining},
	Volume = {19, Suppl. 1},
	Year = {2003}}

@inproceedings{buyko06bionlp,
	Author = {Ekaterina Buyko and Joachim Wermter and Michael Poprat and Udo Hahn},
	Booktitle = {Proceedings of the Joint BioLINK-Bio-Ontologies Meeting.},
	Pages = {65--68},
	Title = {{Automatically Adapting an NLP Core Engine to the Biology Domain}},
	Year = {2006}}

@inproceedings{carlson2010nell, Title = {Toward an Architecture for Never-Ending Language Learning}, Author = {Andrew Carlson and Justin Betteridge and Bryan Kisiel and Burr Settles and Estevam R. Hruschka Jr. and Tom M. Mitchell}, Booktitle = {Proceedings of the Twenty-Fourth Conference on Artificial Intelligence}, Year = {2010}}


@inproceedings{bollacker2008freebase,
 author = {Bollacker, Kurt and Evans, Colin and Paritosh, Praveen and Sturge, Tim and Taylor, Jamie},
 title = {Freebase: a collaboratively created graph database for structuring human knowledge},
 booktitle = {Proceedings of the 2008 ACM SIGMOD International Conference on Management of Data},
  year = {2008},
  pages = {1247--1250},
}

@article{kim08geniaevent,
	Abstract = {BACKGROUND:Advanced Text Mining (TM) such as semantic enrichment of
	papers, event or relation extraction, and intelligent Question Answering
	have increasingly attracted attention in the bio-medical domain.
	For such attempts to succeed, text annotation from the biological
	point of view is indispensable. However, due to the complexity of
	the task, semantic annotation has never been tried on a large scale,
	apart from relatively simple term annotation.RESULTS:We have completed
	a new type of semantic annotation, event annotation, which is an
	addition to the existing annotations in the GENIA corpus. The corpus
	has already been annotated with POS (Parts of Speech), syntactic
	trees, terms, etc. The new annotation was made on half of the GENIA
	corpus, consisting of 1,000 Medline abstracts. It contains 9,372
	sentences in which 36,114 events are identified. The major challenges
	during event annotation were (1) to design a scheme of annotation
	which meets specific requirements of text annotation, (2) to achieve
	biology-oriented annotation which reflect biologists' interpretation
	of text, and (3) to ensure the homogeneity of annotation quality
	across annotators. To meet these challenges, we introduced new concepts
	such as Single-facet Annotation and Semantic Typing, which have collectively
	contributed to successful completion of a large scale annotation.CONCLUSION:The
	resulting event-annotated corpus is the largest and one of the best
	in quality among similar annotation efforts. We expect it to become
	a valuable resource for NLP (Natural Language Processing)-based TM
	in the bio-medical domain.},
	Author = {Kim, Jin-Dong and Ohta, Tomoko and Tsujii, Jun'ichi},
	Date-Added = {2009-09-27 15:21:19 +0100},
	Date-Modified = {2009-09-27 15:22:10 +0100},
	Journal = {BMC Bioinformatics},
	Number = {1},
	Pages = {10},
	Pubmedid = {18182099},
	Title = {Corpus annotation for mining biomedical events from literature},
	Volume = {9},
	Year = {2008},
	Bdsk-Url-1 = {http://www.biomedcentral.com/1471-2105/9/10},
	Bdsk-Url-2 = {http://dx.doi.org/10.1186/1471-2105-9-10}}

@phdthesis{karin05verbnet,
	Author = {Karin Kipper-Schuler},
	School = {University of Pennsylvania},
	Title = {VerbNet: A broad-coverage, comprehensive verb lexicon},
	Year = {2005}}

@inproceedings{carreras2005conll,
	Address = {Ann Arbor, MI USA},
	Author = {Xavier Carreras and Llu{\'\i}s M{\`a}rquez},
	Booktitle = {Proceedings of the 9th Conference on Natural Language Learning},
	Pages = {1-13},
	Title = {{Introduction to the CoNLL-2005 Shared Task: Semantic Role Labeling}},
	Year = {2005}}

@inproceedings{klein02clustering,
	Author = {Klein, Dan and Kamvar, Sepandar D. and Manning, Christopher D.},
	Booktitle = {Proceedings of the Nineteenth International Conference on Machine Learning},
	Pages = {307--314},
	Title = {From Instance-level Constraints to Space-Level Constraints: Making the Most of Prior Knowledge in Data Clustering},
	Year = {2002}}

@inproceedings{koo08parsing,
	Author = {Koo, Terry and Carreras, Xavier and Collins, Michael},
	Booktitle = {Proceedings of the 46th Annual Meeting of the Association of Computational Linguistics: Human Language Technologies},
	Pages = {595--603},
	Title = {Simple Semi-supervised Dependency Parsing},
	Year = {2008}}

@inproceedings{mcclosky2011bionlp,
	Author = {David McClosky and Mihai Surdeanu and Christopher D. Manning},
	Booktitle = {Proceedings of the BioNLP Workshop},
	Title = {Event Extraction as Dependency Parsing for BioNLP 2011},
	Year = {2011}}

@inproceedings{daume07da,
	Author = {Hal {Daum\'e III}},
	Booktitle = {Proceedings of the 45th Annual Meeting of the Association for Computational Linguistics},
	Pages = {256--263},
	Title = {Frustratingly Easy Domain Adaptation},
	publisher = {Association for Computational Linguistics},
	Year = {2007}}

@inproceedings{daume07coalescent,
	Author = {Yee Whye Teh and Hal {Daum\'e III} and Daniel Roy},
	Booktitle = {Proceedings of the Twenty-First Annual Conference on Neural Information Processing Systems},
	Date-Modified = {2010-04-24 18:49:44 -0500},
	Title = {Bayesian Agglomerative Clustering with Coalescents},
	Year = {2007}}

@article{daume2009searn,
	Address = {Hingham, MA, USA},
	Author = {Daum\'{e} III, Hal and Langford, John and Marcu, Daniel},
	Issue = {3},
	Journal = {Machine Learning},
	Keywords = {Reductions, Search, Structured prediction},
	Numpages = {29},
	Pages = {297--325},
	Publisher = {Kluwer Academic Publishers},
	Title = {Search-based structured prediction},
	Volume = {75},
	Year = {2009}}

@inproceedings{korhonen06valex,
	Author = {Anna Korhonen and Yuval Krymolowski and Ted Briscoe},
	Booktitle = {Proceedings of the 5th International Conference on Language Resources and Evaluation},
	Title = {A Large Subcategorization Lexicon for Natural Language Processing Applications},
	Year = {2006}}

@inproceedings{korhonen08bio,
	Author = {Korhonen, Anna and Krymolowski, Yuval and Collier, Nigel},
	Booktitle = {Proceedings of the 22nd International Conference on Computational Linguistics},
	Location = {Manchester, United Kingdom},
	Pages = {449--456},
	Title = {The choice of features for classification of verbs in biomedical texts},
	Year = {2008}}

@inproceedings{korhonen06biosem,
	Author = {Korhonen, Anna and Krymolowski, Yuval and Collier, Nigel},
	Booktitle = {Proceedings of the 21st International Conference on Computational Linguistics and 44th Annual Meeting of the Association for Computational Linguistics},
	Pages = {345--352},
	Title = {Automatic classification of verbs in biomedical texts},
	Year = {2006}}

@techreport{neal93mcmc,
	Author = {Radford M. Neal},
	Institution = {University of Toronto, Department of Computer Science},
	Month = {September},
	Title = {{Probabilistic Inference Using Markov Chain Monte Carlo Methods}},
	Tnumber = {CRG-TR-91-1},
	Year = {1993}}

@article{joanis08verb,
	Author = {Joanis, Eric and Stevenson, Suzanne and James, David},
	Journal = {Natural Language Engineering},
	Number = {3},
	Pages = {337--367},
	Title = {A general feature space for automatic verb classification},
	Volume = {14},
	Year = {2008}}

@inproceedings{korhonen03cluster,
	Author = {Anna Korhonen and Yuval Krymolowski and Zvika Marx},
	Booktitle = {Proceedings of the 41st Annual Meeting on Association for Computational Linguistics},
	Location = {Sapporo, Japan},
	Pages = {64--71},
	Title = {Clustering polysemic subcategorization frame distributions semantically},
	Year = {2003}}

@inproceedings{kork07biolink,
	Author = {Ioannis Korkontzelos and Andreas Vlachos and Ian Lewin},
	Booktitle = {Proceedings of BioLink at ISMB},
	Title = {From gene names to actual genes},
	Year = {2007}}

@article{crammer2006pa,
	Author = {Crammer, Koby and Dekel, Ofer and Keshet, Joseph and Shalev-Shwartz, Shai and Singer, Yoram},
	Journal = {Journal of Machine Learning Research},
	Numpages = {35},
	Pages = {551--585},
	Publisher = {JMLR.org},
	Title = {Online Passive-Aggressive Algorithms},
	Volume = {7},
	Year = {2006}}

@inproceedings{pasca2006fastExtract,
 author = {Pa\c{s}ca, Marius and Lin, Dekang and Bigham, Jeffrey and Lifchits, Andrei and Jain, Alpa},
 title = {Names and similarities on the web: fact extraction in the fast lane},
 booktitle = {Proceedings of the 21st International Conference on Computational Linguistics and the 44th annual meeting of the Association for Computational Linguistics},
 year = {2006},
 pages = {809--816},
} 

@article{krallinger08biocreative2ppi,
	Abstract = {BACKGROUND::The biomedical literature is the primary information source
	for manual protein-protein interaction annotations. Text-mining systems
	have been implemented to extract binary protein interactions from
	articles, but a comprehensive comparison between the different techniques
	as well as with manual curation was missing.RESULTS::We designed
	a community challenge, the BioCreative II protein-protein interaction
	(PPI) task, based on the main steps of a manual protein interaction
	annotation workflow. It was structured into four distinct subtasks
	related to: (a) detection of protein interaction-relevant articles;
	(b) extraction and normalization of protein interaction pairs; (c)
	retrieval of the interaction detection methods used; and (d) retrieval
	of actual text passages that provide evidence for protein interactions.
	A total of 26 teams submitted runs for at least one of the proposed
	subtasks. In the interaction article detection subtask, the top scoring
	team reached an F-score of 0.78. In the interaction pair extraction
	and mapping to SwissProt, a precision of 0.37 (with recall of 0.33)
	was obtained. For associating articles with an experimental interaction
	detection method, an F-score of 0.65 was achieved. As for the retrieval
	of the PPI passages best summarizing a given protein interaction
	in full-text articles, 19% of the submissions returned by one of
	the runs corresponded to curator-selected sentences. Curators extracted
	only the passages that best summarized a given interaction, implying
	that many of the automatically extracted ones could contain interaction
	information but did not correspond to the most informative sentences.CONCLUSION::The
	BioCreative II PPI task is the first attempt to compare the performance
	of text-mining tools specific for each of the basic steps of the
	PPI extraction pipeline. The challenges identified range from problems
	in full-text format conversion of articles to difficulties in detecting
	interactor protein pairs and then linking them to their database
	records. Some limitations were also encountered when using a single
	(and possibly incomplete) reference database for protein normalization
	or when limiting search for interactor proteins to co-occurrence
	within a single sentence, when a mention might span neighboring sentences.
	Finally, distinguishing between novel, experimentally verified interactions
	(annotation relevant) and previously known interactions adds additional
	complexity to these tasks.},
	Author = {Krallinger, Martin and Leitner, Florian and Rodriguez-Penagos, Carlos and Valencia, Alfonso},
	Journal = {Genome Biology},
	Number = {Suppl 2},
	Owner = {andreas},
	Pages = {S4},
	Pubmedid = {18834495},
	Timestamp = {2009.08.29},
	Title = {Overview of the protein-protein interaction annotation extraction task of {BioCreative II}},
	Volume = {9},
	Year = {2008},
	Bdsk-Url-1 = {http://genomebiology.com/2008/9/S2/S4},
	Bdsk-Url-2 = {http://dx.doi.org/10.1186/gb-2008-9-s2-s4}}

@inproceedings{krallinger07ppi,
	Author = {Martin Krallinger and Florian Leitner and Alfonso Valencia},
	Booktitle = {Proceedings of the Second BioCreative Challenge Evaluation Workshop},
	Title = {Assessment of the {S}econd {B}io{C}re{A}t{I}v{E} {PPI} Task: {A}utomatic Extraction of Protein-Protein Interactions},
	Year = {2007}}

@article{kraut00blast,
	Author = {M. Krauthammer and A. Rzhetskya and P. Morozovb and C. Friedman},
	Journal = {Gene},
	Month = {December},
	Pages = {245-252},
	Title = {Using {BLAST} for identifying gene and protein names in journal articles},
	Volume = {259},
	Year = {2000}}

@inproceedings{kristjansson-interactive,
	Author = {Trausti Kristjansson and Aron Culotta and Paul Viola and Andrew McCallum.},
	Booktitle = {Proceedings of the Nineteenth National Conference on Artificial Intelligence, Sixteenth Conference on Innovative Applications of Artificial Intelligence},
	Month = {July},
	Pages = {412-418},
	Title = {Interactive Information Extraction with Constrained Conditional Random Fields},
	Year = {2004}}

@inproceedings{kudoh2000conll,
	Address = {Lisbon, Portugal},
	Author = {Taku Kudoh and Yuji Matsumoto},
	Booktitle = {Proceedings of the Fourth Conference on Computational Natural Language Learning},
	Editor = {Claire Cardie and Walter Daelemans and Claire Nedellec and Tjong Kim Sang, Erik},
	Month = {September},
	Pages = {142--144},
	Title = {Use of Support Vector Learning for Chunk Identification},
	Year = {2000}}

@phdthesis{webber1978thesis,
  author = {Webber, Bonnie Lynn},
  school = {Harvard University},
  title = {A Formal Approach to Discourse Anaphora},
  year = {1978}
}

@inproceedings{kurihara07vdpgm,
	Author = {Kurihara, Kenichi and Welling, Max and Teh, Yee W.},
	Booktitle = {Proceedings of the 20th International Joint Conference on Artificial Intelligence},
	Title = {Collapsed Variational {D}irichlet Process Mixture Models},
	Year = {2007}}

@inproceedings{lafferty01conditional,
	Author = {John D. Lafferty and Andrew McCallum and Fernando Pereira},
	Booktitle = {Proceedings of 18th International Conference in Machine Learning},
	Pages = {282--289},
	Publisher = {Morgan Kaufmann Publishers Inc.},
	Title = {Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data},
	Year = {2001}}

@misc{CRFsuite,
	author = {Naoaki Okazaki},
	title = {{CRFsuite: a fast implementation of Conditional Random Fields (CRFs)}},
	url = {http://www.chokkan.org/software/crfsuite/},
	year = {2007}
}
@inproceedings{Lang9520NG,
	Author = {Ken Lang},
	Booktitle = {Proceedings of the Twelfth International Conference on Machine Learning},
	Location = {Tahoe City, California, USA},
	Month = {July},
	Pages = {331-339},
	Publisher = {Morgan Kaufmann},
	Title = {Newsweeder: Learning to filter netnews},
	Year = {1995}}

@inproceedings{thompson99active,
	Author = {Thompson, Cynthia A. and Califf, Mary Elaine and Mooney, Raymond J.},
	Booktitle = {Proceedings of the Sixteenth International Conference on Machine Learning},
	Pages = {406--414},
	Title = {Active Learning for Natural Language Parsing and Information Extraction},
	Year = {1999}}

@inproceedings{zettlemoyer05uai,
	Author = {Luke S. Zettlemoyer and Michael Collins},
	Booktitle = {Proceedings of the 21st Conference on Uncertainty in Artificial Intelligence},
	Pages = {658-666},
	Title = {Learning to Map Sentences to Logical Form: Structured Classification with Probabilistic Categorial Grammars.},
	Year = {2005}}

@inproceedings{dahl94atis,
	Author = {Dahl, Deborah A. and Bates, Madeleine and Brown, Michael and Fisher, William and Hunicke-Smith, Kate and Pallett, David and Pao, Christine and Rudnicky, Alexander and Shriberg, Elizabeth},
	Booktitle = {Proceedings of the Workshop on Human Language Technology},
	Pages = {43--48},
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	Editor = {A. Waibel and K.-F. Lee},
	Pages = {267-296},
	Publisher = {Kaufmann},
	Title = {{A tutorial on hidden Markov models and selected apllications in speech recognition}},
	Year = {1990}}

@inproceedings{iob,
	Address = {Somerset, New Jersey},
	Author = {Ramshaw, Lance and Marcus, Mitch},
	Booktitle = {Proceedings of the Third Workshop on Very Large Corpora},
	Citeulike-Article-Id = {1205756},
	Editor = {Yarovsky, David and Church, Kenneth},
	Keywords = {history, chunking},
	Pages = {82--94},
	Priority = {2},
	Publisher = {Association for Computational Linguistics},
	Title = {Text Chunking Using Transformation-Based Learning},
	Year = {1995}}

@article{rand71eval,
	Author = {Rand, William M.},
	Journal = {Journal of the American Statistical Association},
	Number = {336},
	Pages = {846--850},
	Title = {Objective criteria for the evaluation of clustering methods},
	Volume = {66},
	Year = {1971}}

@techreport{rifkin01svm,
	Author = {Jason D. M. Rennie and Ryan Rifkin},
	Institution = {Massachusetts Insititute of Technology, Artificial Intelligence Laboratory},
	Number = {AIM-2001-026},
	Title = {Improving multiclass text classification with the {S}upport {V}ector {M}achine},
	Year = {2001}}

@article{clark09bioccg,
	Author = {Rimell, Laura and Clark, Stephen},
	Journal = {Journal of Biomedical Informatics},
	Number = {5},
	Pages = {852-865},
	Title = {Porting a lexicalized-grammar parser to the biomedical domain},
	Volume = {42},
	Year = {2009}}

@inproceedings{rosen07vmeasure,
	Author = {Rosenberg, Andrew and Hirschberg, Julia},
	Booktitle = {Proceedings of the 2007 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning},
	Location = {Prague, Czech Republic},
	Pages = {410--420},
	Priority = {0},
	Title = {V-Measure: A Conditional Entropy-Based External Cluster Evaluation Measure},
        Address = {Prague, Czech Republic},
	Year = {2007}}

@inproceedings{Sagae07dependencyparsing,
	Author = {Sagae, Kenji and Tsujii, Jun'ichi},
	Booktitle = {Proceedings of the CoNLL Shared Task Session of EMNLP-CoNLL},
	Pages = {1044--1050},
	Title = {Dependency Parsing and Domain Adaptation with {LR} Models and Parser Ensembles},
	Year = {2007}}

@manual{eutils,
	Author = {Eric Sayers and David Wheeler},
	Organization = {NCBI},
	Title = {Building Customized Data Pipelines Using the Entrez Programming Utilities (eUtils)},
	Url = {#http://www.ncbi.nlm.nih.gov/books/#},
	Bdsk-Url-1 = {#http://www.ncbi.nlm.nih.gov/books/%23}}

@inproceedings{schapire97boosting,
	Author = {Robert E. Schapire and Yoav Freund and Peter Bartlett and Wee Sun Lee},
	Booktitle = {Proceedings of the Fourteenth International Conference on Machine Learning},
	Month = {July},
	Pages = {322--330},
	Publisher = {Morgan Kaufmann},
	Title = {Boosting the margin: a new explanation for the effectiveness of voting methods},
	Year = {1997}}

@inproceedings{scheffer01active,
	Address = {London, UK},
	Author = {Tobias Scheffer and Christian Decomain and Stefan Wrobel},
	Booktitle = {Proceedings of the 4th International Conference on Advances in Intelligent Data Analysis},
	Isbn = {3-540-42581-0},
	Pages = {309--318},
	Publisher = {Springer-Verlag},
	Title = {{Active Hidden Markov Models for Information Extraction}},
	Year = {2001}}

@techreport{schein04optimality,
	Author = {A. Schein and L. Ungar},
	Institution = {University of Pennsylvania Department of Computer and Information Science},
	Number = {MS-CIS-04-07},
	Title = {A-Optimality for Active Learning of Logistic Regression Classifiers},
	Year = {2004}}

@inproceedings{kohlschutter2010boilerpipe,
 author = {Kohlsch\"{u}tter, Christian and Fankhauser, Peter and Nejdl, Wolfgang},
 title = {Boilerplate detection using shallow text features},
 booktitle = {Proceedings of the 3rd ACM International Conference on Web Search and Data Mining},
 year = {2010},
 pages = {441--450},
} 

@inproceedings{schohn00less,
	Address = {San Francisco, CA},
	Author = {Greg Schohn and David Cohn},
	Booktitle = {Proceedings of the Seventeenth International Conference on Machine Learning},
	Pages = {839--846},
	Publisher = {Morgan Kaufmann},
	Title = {Less is More: {A}ctive Learning with Support Vector Machines},
	Year = {2000}}

@article{walde06german,
	Author = {Sabine {Schulte im Walde}},
	Journal = {Computational Linguistics},
	Number = {2},
	Pages = {159--194},
	Title = {Experiments on the Automatic Induction of German Semantic Verb Classes},
	Volume = {32},
	Year = {2006}}

@article{scott_bayesian_2002,
	Author = {Steven L. Scott},
	Issn = {01621459},
	Journal = {Journal of the American Statistical Association},
	Keywords = {{HMM,MCMC}},
	Month = mar,
	Number = {457},
	Pages = {337--351},
	Title = {{Bayesian Methods for Hidden Markov Models: Recursive Computing in the 21st Century}},
	Url = {http://www.jstor.org/stable/3085787},
	Volume = {97},
	Year = {2002},
	Bdsk-Url-1 = {http://www.jstor.org/stable/3085787}}

@article{sethuraman94stick,
	Author = {Jayaram Sethuraman},
	Journal = {Statistica Sinica},
	Pages = {639-650},
	Title = {A CONSTRUCTIVE DEFINITION OF {D}IRICHLET PRIORS},
	Volume = {4},
	Year = {1994}}

@book{domingos2009mln,
	Author = {Domingos, Pedro and Lowd, Daniel},
	Edition = {1st},
	Isbn = {1598296922, 9781598296921},
	Publisher = {Morgan and Claypool Publishers},
	Title = {Markov Logic: An Interface Layer for Artificial Intelligence},
	Year = {2009}}

@article{richardson2006mln,
	Acmid = {1113910},
	Address = {Hingham, MA, USA},
	Author = {Richardson, Matthew and Domingos, Pedro},
	Doi = {10.1007/s10994-006-5833-1},
	Issn = {0885-6125},
	Issue = {1-2},
	Journal = {Mach. Learn.},
	Keywords = {First-order logic, Graphical models, Inductive logic programming, Knowledge-based model construction, Link prediction, Log-linear models, Markov chain Monte Carlo, Markov networks, Markov random fields, Pseudo-likelihood, Satisfiability, Statistical relational learning},
	Month = {February},
	Numpages = {30},
	Pages = {107--136},
	Publisher = {Kluwer Academic Publishers},
	Title = {Markov logic networks},
	Url = {http://portal.acm.org/citation.cfm?id=1113907.1113910},
	Volume = {62},
	Year = {2006},
	Bdsk-Url-1 = {http://portal.acm.org/citation.cfm?id=1113907.1113910},
	Bdsk-Url-2 = {http://dx.doi.org/10.1007/s10994-006-5833-1}}

@inproceedings{domingos1999metacost,
	Author = {Domingos, Pedro},
	Booktitle = {Proceedings of the 5th International Conference on Knowledge Discovery and Data Mining},
	Pages = {155--164},
	Title = {MetaCost: a general method for making classifiers cost-sensitive},
	publisher = {Association for Computing Machinery},
	Year = {1999}}

@techreport{settles09al,
	Author = {Burr Settles},
	Institution = {University of Wisconsin--Madison},
	Number = {1648},
	Title = {Active Learning Literature Survey},
	Type = {Computer Sciences Technical Report},
	Year = {2009}}

@book{settles2012al,
	Author = {B. Settles},
	Publisher = {Morgan \& Claypool},
	Series = {Synthesis Lectures on Artificial Intelligence and Machine Learning},
	Title = {Active Learning},
	Year = {2012}}

@article{hachey2006legal,
 author = {Hachey, Ben and Grover, Claire},
 title = {Extractive summarisation of legal texts},
 journal = {Artificial Intelligence and Law},
 issue_date = {December 2006},
 volume = {14},
 number = {4},
 year = {2006},
 issn = {0924-8463},
 pages = {305--345},
 numpages = {41},
 publisher = {Kluwer Academic Publishers},
 address = {Hingham, MA, USA},
} 

@inproceedings{doppa2012search,
 title = {Output Space Search for Structured Prediction },
 author = {Janardhan Rao Doppa and Alan Fern and Prasad Tadepalli},
 year = {2012},
 booktitle = {Proceedings of the 29th International Conference on Machine Learning}
}

@article{vlachos2012ewrl,
  title = {An investigation of imitation learning algorithms for structured prediction},
  author = {Andreas Vlachos},
  year = {2012},
  journal = {Journal of Machine Learning Research Workshop and Conference Proceedings, Proceedings of the 10th European Workshop on Reinforcement Learning},
  volume= {24},
  pages = {143-154}
}


@inproceedings{weiss2010struct,
    author = {David Weiss and Ben Taskar},
    title = {Structured Prediction Cascades},
    year = {2010},
    Booktitle = {Proceedings of the Thirteenth International Conference on Artificial Intelligence and Statistics},
}

@inproceedings{settles2004crf,
	Author = {Burr Settles},
	Booktitle = {Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications},
	Journal = {Proceedings of the Joint Workshop on Natural Language Processing in Biomedicine and its Applications},
	Title = {{Biomedical Named Entity Recognition Using Conditional Random Fields and Novel Feature Sets}},
	Year = {2004}}

@inproceedings{seung92select,
	Author = {H. Sebastian Seung and Manfred Opper and Haim Sompolinsky},
	Booktitle = {Proceedings of the Fifth Annual ACM Conference on Computational Learning Theory},
	Location = {Pittsburgh, Pennsylvania, United States},
	Month = {July},
	Pages = {287--294},
	Title = {Query by committee},
	Year = {1992}}

@inproceedings{sha03crf,
	Author = {Sha, Fei and Pereira, Fernando},
	Booktitle = {Proceedings of the 2003 Conference of the North American Chapter of the Association for Computational Linguistics on Human Language Technology},
	Location = {Edmonton, Canada},
	Pages = {134--141},
	Title = {Shallow parsing with conditional random fields},
	Year = {2003}}

@inproceedings{shen04ner,
	Address = {Barcelona},
	Author = {D. Shen and J. Zhang and J. Su and G. Zhou and C. L. Tan},
	Booktitle = {Proceedings of the 42nd Annual Meeting of the Association for Computational Linguistics},
	Month = {July},
	Pages = {21-26},
	Title = {Multi-criteria-based active learning for named entity recongition},
	Year = {2004}}

@inproceedings{siefkes:2006:HLT-NAACL06-Short,
	Author = {Siefkes, Christian},
	Booktitle = {Proceedings of the Human Language Technology Conference of the NAACL, Companion Volume: Short Papers},
	Location = {New York City, USA},
	Pages = {149--152},
	Title = {A Comparison of Tagging Strategies for Statistical Information Extraction},
	Year = {2006}}

@inproceedings{jonas05faking,
	Author = {J. Sj\"{o}bergh and O. Knutsson},
	Booktitle = {Proceedings of RANLP 2005},
	Title = {Faking Errors to avoid Making Errors: Machine Learning for Error Detection in Writing},
	Year = {2005}}

@inproceedings{snow07mergesense,
	Author = {Snow, Rion and Prakash, Sushant and Jurafsky, Daniel and Ng, Andrew Y.},
	Booktitle = {Proceedings of the 2007 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning},
	Pages = {1005--1014},
	Title = {Learning to Merge Word Senses},
	Year = {2007}}

@inproceedings{sun08cicling,
	Author = {Lin Sun and Anna Korhonen and Yuval Krymolowski},
	Booktitle = {Proceedings of the 9th International Conference on Intelligent Text Processing and Computational Linguistics},
	Title = {Verb Class Discovery from Rich Syntactic Data},
	Year = {2008}}

@incollection{sutton06crf,
	Author = {Charles Sutton and Andrew McCallum},
	Booktitle = {Introduction to Statistical Relational Learning},
	Editor = {Lise Getoor and Ben Taskar},
	Publisher = {MIT Press},
	Title = {An Introduction to Conditional Random Fields for Relational Learning},
	Year = {2006}}

@inproceedings{swier04usrl,
	Author = {Robert S. Swier and Suzanne Stevenson},
	Booktitle = {Proceedings of the 2004 Conference on Empirical Methods in Natural Language Processing},
	Pages = {95--102},
	Title = {Unsupervised Semantic Role Labelling},
	Year = {2004}}

@misc{genetaggerCRF,
	Author = {R. Talreja and A. Schein and S. Winters and L. Ungar},
	Title = {{GeneTaggerCRF}: An Entity Tagger for Recognizing Gene Names in Text},
	Year = {2004}}

@inproceedings{yuka04geniapos,
	Author = {Tateisi, Yuka and Jun'ichi Tsujii},
	Booktitle = {Proceedings of the the 4th International Conference on Language Resources},
	Owner = {andreas},
	Pages = {1267-1270},
	Timestamp = {2009.10.09},
	Title = {Part-of-Speech Annotation of Biology Research Abstracts},
	Year = {2004}}

@inproceedings{tateisi05geniasyntax,
	Author = {Tateisi, Yuka and Akane Yakushiji and Tomoko Ohta and Jun'ichi Tsujii},
	Booktitle = {Proceedings of the 2nd International Joint Conference on Natural Language Processing, Companion Volume},
	Month = {October},
	Owner = {andreas},
	Pages = {222-227},
	Timestamp = {2009.10.09},
	Title = {Syntax annotation for the {GENIA} corpus},
	Year = {2005}}

@inproceedings{teh06py,
	Address = {Sydney, Australia},
	Author = {Yee Whye Teh},
	Booktitle = {Proceedings of the 21st International Conference on Computational Linguistics and 44th Annual Meeting of the Association for Computational Linguistics},
	Month = {July},
	Pages = {985-992},
	Title = {A Hierarchical {B}ayesian Language Model based on {P}itman-{Y}or Processes},
	Year = {2006}}

@article{teh06hdp,
	Author = {Yee Whye Teh and Michael I. Jordan and Matthew J. Beal and D. M. Blei},
	Journal = {Journal of the American Statistical Association},
	Number = {476},
	Pages = {1566-1581},
	Title = {Hierarchical {D}irichlet Processes},
	Volume = {101},
	Year = {2006}}

@inproceedings{chang2009reading,
	Author = {Jonathan Chang and Jordan Boyd-Graber and Chong Wang and Sean Gerrish and David M. Blei},
	Booktitle = {NIPS},
	Title = {Reading Tea Leaves: How Humans Interpret Topic Models},
	Url = {http://books.nips.cc/papers/files/nips22/NIPS2009_0125.pdf},
	Year = {2009},
	Bdsk-Url-1 = {http://books.nips.cc/papers/files/nips22/NIPS2009_0125.pdf}}

@article{blei03lda,
	Abstract = {We describe latent Dirichlet allocation (LDA), a generative probabilistic model for collections of discrete data such as text corpora. LDA is a three-level hierarchical Bayesian model, in which each item of a collection is modeled as a finite mixture over an underlying set of topics. Each topic is, in turn, modeled as an infinite mixture over an underlying set of topic probabilities. In the context of text modeling, the topic probabilities provide an explicit representation of a document. We present efficient approximate inference techniques based on variational methods and an EM algorithm for empirical Bayes parameter estimation. We report results in document modeling, text classification, and collaborative filtering, comparing to a mixture of unigrams model and the probabilistic LSI model.},
	Author = {Blei, David M. and Ng, Andrew Y. and Jordan, Michael I.},
	Journal = {Journal of Machine Learning Research},
	Keywords = {lda, model, topic},
	Month = {January},
	Pages = {993--1022},
	Priority = {2},
	Title = {{Latent Dirichlet Allocation}},
	Volume = {3},
	Year = {2003}}

@article{teufel02sum,
	Author = {Simone Teufel and Marc Moens},
	Doi = {http://dx.doi.org/10.1162/089120102762671936},
	Issn = {0891-2017},
	Journal = {Computational Linguistics},
	Number = {4},
	Pages = {409--445},
	Publisher = {MIT Press},
	Title = {Summarizing scientific articles: experiments with relevance and rhetorical status},
	Volume = {28},
	Year = {2002},
	Bdsk-Url-1 = {http://dx.doi.org/10.1162/089120102762671936}}

@inproceedings{goldberg09wishes,
	Author = {Goldberg, Andrew B. and Fillmore, Nathanael and Andrzejewski, David and Xu, Zhiting and Gibson, Bryan and Zhu, Xiaojin},
	Booktitle = {Proceedings of Human Language Technologies: The 2009 Annual Conference of the North American Chapter of the Association for Computational Linguistics},
	Location = {Boulder, Colorado},
	Pages = {263--271},
	Title = {May All Your Wishes Come True: A Study of Wishes and How to Recognize Them},
	Year = {2009}}

@article{bea08biopipe,
	Author = {Alex, Beatrice and Grover, Claire and Haddow, Barry and Kabadjov, Mijail and Klein, Ewan and Matthews, Michael and Tobin, Richard and Wang, Xinglong},
	Doi = {10.1186/gb-2008-9-s2-s10},
	Issn = {1465-6906},
	Journal = {Genome Biology},
	Number = {Suppl 2},
	Pages = {S10},
	Pubmedid = {18834488},
	Title = {Automating curation using a natural language processing pipeline},
	Url = {http://genomebiology.com/2008/9/S2/S10},
	Volume = {9},
	Year = {2008},
	Bdsk-Url-1 = {http://genomebiology.com/2008/9/S2/S10},
	Bdsk-Url-2 = {http://dx.doi.org/10.1186/gb-2008-9-s2-s10}}

@inproceedings{tksintro2002conll,
	Author = {Tjong Kim Sang, Erik F.},
	Booktitle = {Proceedings of the Sixth Workshop on Computational Language Learning},
	Editor = {Dan Roth and Antal van den Bosch},
	Owner = {andreas},
	Pages = {155--158},
	Timestamp = {2009.08.29},
	Title = {{Introduction to the CoNLL-2002 Shared Task: Language-Independent Named Entity Recognition}},
	Year = {2002}}

@inproceedings{tksbuchholz2000conll,
	Author = {Tjong Kim Sang, Erik F. and Sabine Buchholz},
	Booktitle = {Proceedings of the Fourth Conference on Computational Natural Language Learning},
	Editor = {Claire Cardie and Walter Daelemans and Claire Nedellec and Tjong Kim Sang, Erik},
	Month = {September},
	Pages = {127--132},
	Publisher = {Lisbon, Portugal},
	Title = {Introduction to the {CoNLL}-2000 Shared Task: Chunking},
	Year = {2000}}

@inproceedings{tjongkimsang2003conll,
	Author = {Tjong Kim Sang, Erik F. and De Meulder, Fien},
	Booktitle = {Proceedings of the Seventh Conference on Computational Natural Language Learning},
	Editor = {Walter Daelemans and Miles Osborne},
	Pages = {142--147},
	Publisher = {Edmonton, Canada},
	Title = {{Introduction to the CoNLL-2003 Shared Task: Language-Independent Named Entity Recognition}},
	Year = {2003}}

@inproceedings{tomanek09acl,
	Author = {Tomanek, Katrin and Hahn, Udo},
	Booktitle = {Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP},
	Location = {Suntec, Singapore},
	Month = {August},
	Pages = {1039--1047},
	Title = {Semi-Supervised Active Learning for Sequence Labeling},
	Year = {2009}}

@inproceedings{tomanek07active,
	Address = {Prague, Czech Republic},
	Author = {Tomanek, Katrin and Wermter, Joachim and Hahn, Udo},
	Booktitle = {Proceedings of the 2007 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning},
	Pages = {486--495},
	Title = {An Approach to Text Corpus Construction which Cuts Annotation Costs and Maintains Reusability of Annotated Data},
	Year = {2007}}

@inproceedings{tong00support,
	Address = {Stanford, US},
	Author = {Simon Tong and Daphne Koller},
	Booktitle = {Proceedings of {ICML}-00, 17th International Conference on Machine Learning},
	Editor = {Pat Langley},
	Pages = {999--1006},
	Publisher = {Morgan Kaufmann Publishers, San Francisco, US},
	Title = {Support Vector Machine Active Learning with Applications to Text Classification},
	Url = {citeseer.ist.psu.edu/article/tong01support.html},
	Year = {2000},
	Bdsk-Url-1 = {citeseer.ist.psu.edu/article/tong01support.html}}


@inproceedings{macmahon2006walk,
 author = {MacMahon, Matt and Stankiewicz, Brian and Kuipers, Benjamin},
 title = {Walk the talk: connecting language, knowledge, and action in route instructions},
 booktitle = {Proceedings of the 21st National Conference on Artificial Intelligence},
 year = {2006},
 location = {Boston, Massachusetts},
 pages = {1475--1482},
 publisher = {AAAI Press},
} 

@article{georgila2009automatic,
  title={Automatic annotation of context and speech acts for dialogue corpora},
  author={Georgila, Kallirroi and Lemon, Oliver and Henderson, James and Moore, Johanna D},
  journal={Natural Language Engineering},
  volume={15},
  number={3},
  pages={315--353},
  year={2009},
  publisher={Cambridge Univesrity Press}
}


@TechReport{allen1997damsl,
 author = {James Allen and Mark Core},
 title = {Dialogue act markup in several layers},
 institution = {University of Rochester},
 year = {1997},
 OPTkey = {},
 OPTtype = {},
 OPTnumber = {},
 OPTaddress = {},
 OPTmonth = {},
 OPTnote = {},
 OPTannote = {},
 OPTurl = {},
 OPTurldate = {},
 OPTlastchecked = {},
 OPTdoi = {},
 OPTisbn = {},
 OPTissn = {},
 OPTlocalfile = {},
 OPTabstract = {},
 OPTkeywords = {},
}


@article{fundel07relex,
	Author = {Fundel, Katrin and Kuffner, Robert and Zimmer, Ralf},
	Journal = {Bioinformatics},
	Number = {3},
	Pages = {365-371},
	Title = {{RelEx--Relation extraction using dependency parse trees}},
	Volume = {23},
	Year = {2007}}

@article{roberts08patient,
	Author = {Roberts, Angus and Gaizauskas, Robert and Hepple, Mark and Guo, Yikun},
	Journal = {BMC Bioinformatics},
	Number = {Suppl 11},
	Pages = {S3},
	Title = {Mining clinical relationships from patient narratives},
	Volume = {9},
	Year = {2008}}

@article{bundschus08crf,
	Author = {Bundschus, Markus and Dejori, Mathaeus and Stetter, Martin and Tresp, Volker and Kriegel, Hans-Peter},
	Journal = {BMC Bioinformatics},
	Number = {1},
	Pages = {207},
	Title = {Extraction of semantic biomedical relations from text using conditional random fields},
	Volume = {9},
	Year = {2008}}

@article{tong02jmlr,
	Author = {Simon Tong and Daphne Koller},
	Bibsource = {DBLP, http://dblp.uni-trier.de},
	Ee = {http://www.ai.mit.edu/projects/jmlr/papers/volume2/tong01a/abstract.html},
	Journal = {Journal of Machine Learning Research},
	Pages = {45-66},
	Title = {Support Vector Machine Active Learning with Applications to Text Classification.},
	Volume = {2},
	Year = {2002}}

@book{vanrijsbergen79information,
	Address = {Newton, MA, USA},
	Author = {Van Rijsbergen, Keith},
	Edition = {2nd edition},
	Publisher = {Butterworth-Heinemann},
	Title = {Information Retrieval},
	Year = {1979}}

@incollection{keizer2012simulation,
  year={2012},
  isbn={978-1-4614-4802-0},
booktitle={Data-Driven Methods for Adaptive Spoken Dialogue Systems},
editor={Lemon, Oliver and Pietquin, Olivier},
doi={10.1007/978-1-4614-4803-7_4},
title={User Simulation in the Development of Statistical Spoken Dialogue Systems},
url={http://dx.doi.org/10.1007/978-1-4614-4803-7_4},
publisher={Springer New York},
author={Keizer, Simon and Rossignol, Stéphane and Chandramohan, Senthilkumar and Pietquin, Olivier},
pages={39-73},
language={English}
}


@book{Vapnik95,
	Abstract = {A very good high-level introduction in Statistical Learning Theory
	in the VC formulation, plus a comprehensive overview of the SV algorithm.
	First description of SV machines for regression estimation.},
	Address = {N.Y.},
	Author = {Vladimir Vapnik},
	Publisher = {Springer},
	Title = {The Nature of Statistical Learning Theory},
	Year = {1995}}

@inproceedings{vlachos07biocreative,
	Author = {Andreas Vlachos},
	Booktitle = {Proceedings of the Second BioCreative Challenge Evaluation Workshop},
	Title = {Tackling the {BioCreAtIvE} {G}ene {M}ention task with {C}onditional {R}andom {F}ields and {S}yntactic {P}arsing},
	Year = {2007}}

@inproceedings{vlachos07bionlp,
	Address = {Prague, Czech Republic},
	Author = {Vlachos, Andreas},
	Booktitle = {Proceedings of the ACL workshop BioNLP: Biological, translational, and clinical language processing},
	Pages = {199--206},
	Publisher = {Association for Computational Linguistics},
	Title = {Evaluating and combining biomedical named entity recognition systems},
	Year = {2007}}

@inproceedings{vlachos06eacl,
	Author = {Andreas Vlachos},
	Booktitle = {Proceedings of the EACL workshop on Adaptive Text Extraction and Mining},
	Title = {Active Annotation},
	Year = {2006}}

@inproceedings{vlachos09bionlp,
	Author = {Vlachos, Andreas and Buttery, Paula and \'{O} S\'{e}aghdha, Diarmuid and Briscoe, Ted},
	Booktitle = {Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task},
	Location = {Boulder, Colorado},
	Pages = {37--40},
	Title = {Biomedical Event Extraction without Training Data},
	Year = {2009}}

@ARTICLE{vlachos2012bmc,
author  = {Vlachos, Andreas and Craven, Mark},
title   = {{Biomedical event extraction from abstracts and full papers using search-based structured prediction}},
journal = {BMC Bioinformatics},
year    = {2012},
volume  = {13},
number  = {suppl. 11},
pages   = {S5},
}

@book{manning2008ir,
 author = {Manning, Christopher D. and Raghavan, Prabhakar and Schtze, Hinrich},
 title = {Introduction to Information Retrieval},
 year = {2008},
 isbn = {0521865719, 9780521865715},
 publisher = {Cambridge University Press},
 address = {New York, NY, USA},
} 


@inproceedings{vlachos2011bionlp,
	Author = {Vlachos, Andreas and Craven, Mark},
	Booktitle = {Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task},
	Pages = {36--40},
	Title = {Biomedical Event Extraction from Abstracts and Full Papers using Search-based Structured Prediction},
	Year = {2011}}

@inproceedings{maas2011acl,
	Address = {Portland, Oregon},
	Author = {Maas, Andrew L. and Daly, Raymond E. and Pham, Peter T. and Huang, Dan and Ng, Andrew Y. and Potts, Christopher},
	Booktitle = {Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics},
	Pages = {142--150},
	Title = {Learning Word Vectors for Sentiment Analysis},
	Year = {2011}}

@inproceedings{socher2011emnlp,
	Author = {Richard Socher and Jeffrey Pennington and Eric H. Huang and Andrew Y. Ng and Christopher D. Manning},
	Booktitle = {Proceedings of the 2011 Conference on Empirical Methods in Natural Language Processing},
	Title = {{Semi-Supervised Recursive Autoencoders for Predicting Sentiment Distributions}},
	Year = 2011}

@inproceedings{riedel2011bionlp,
	Author = {Riedel, Sebastian and McCallum, Andrew},
	Booktitle = {Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task},
	Pages = {46--50},
	Title = {Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation},
	Year = {2011}}

@inproceedings{faust2011bionlp,
	Author = {Riedel, Sebastian and McClosky, David and Surdeanu, Mihai and McCallum, Andrew and D. Manning, Christopher},
	Booktitle = {Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task},
	Pages = {51--55},
	Title = {Model Combination for Event Extraction in BioNLP 2011},
	Year = {2011}}

@inproceedings{riedel11fast,
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	Year = {2011}}

@InProceedings{klein2002stanfordParser,
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@inproceedings{vlachos2010bionlp,
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@inproceedings{vlachos06bionlp,
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	Publisher = {Association for Computational Linguistics},
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	Year = {2006}}

@inproceedings{vlachos06psb,
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	Year = {2006}}

@inproceedings{vlachos08pktlp,
	Author = {Andreas Vlachos and Zoubin Ghahramani and Anna Korhonen},
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	Year = {2008}}

@inproceedings{vlachos09cdpmm,
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	Year = {2009}}

@inproceedings{vlachos10alcdpmm,
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	Year = {2010}}

@inproceedings{vlachos11unsupeval,
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	Year = {2011}}

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@inproceedings{wellner05crf,
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