setup.py

"""
OneFL Deduper
------------

OneFlorda Entity Resolution Software (aka Deduper)
<https://github.com/ufbmi/onefl-deduper> is designed to generate hashes of the
specific patient data elements.

Multiple generated hashes are then matched against the registry of "known"
hashes and associated with a Unique Universal Identifier (aka OneFlorida UUID).

The UUID is used to de-duplicate medical records such as
demographics, procedures, diagnoses, vitals, lab results submitted
from different hospital networks.

"""
import unittest
from pip.req import parse_requirements
from setuptools import setup, find_packages


def get_test_suite():
    """
    Prepare a test-suite callable with:
        python setup.py test
    """
    test_loader = unittest.TestLoader()
    test_suite = test_loader.discover('tests', pattern='test_*.py')
    return test_suite


def load_requirements():
    """ Helps to avoid storing requirements in more than one file"""
    reqs = parse_requirements('requirements-to-freeze.txt', session=False)
    reqs_list = [str(ir.req) for ir in reqs]
    return reqs_list


# Configure the package build and distribution
#   @see https://github.com/pypa/setuptools_scm
#   @see http://stackoverflow.com/questions/14399534/how-can-i-reference-requirements-txt-for-the-install-requires-kwarg-in-setuptool  # NOQA
#
# To record the files created use:
#   python setup.py install --record files.txt

setup(
    name="deduper",

    use_scm_version=True,
    url="https://github.com/ufbmi/onefl-deduper",
    license="MIT",
    author="Andrei Sura",
    author_email="bmi-developers@ad.ufl.edu",
    description="OneFlorida De-duplication Software",
    long_description=__doc__,
    keywords=["entity resolution", "deduplication", "record linkage"],

    packages=find_packages(exclude=['tests']),
    include_package_data=True,
    platforms="any",  # darwin, linux2
    setup_requires=["setuptools_scm"],
    install_requires=load_requirements(),
    # tests_require=["mock", "pytest-cov"],  # requirements included above
    test_suite="setup.get_test_suite",

    # https://pypi.python.org/pypi?%3Aaction=list_classifiers
    classifiers=[
        'Development Status :: 4 - Beta',
        'Environment :: Console',
        'Intended Audience :: Science/Research',
        'License :: OSI Approved :: MIT License',
        'Operating System :: MacOS :: MacOS X',
        'Operating System :: Microsoft :: Windows',
        'Operating System :: POSIX',
        'Operating System :: Unix',
        'Programming Language :: Python :: 3.4',
        'Programming Language :: Python :: 3.5',
        'Programming Language :: Python :: 3.6',
        'Topic :: Scientific/Engineering :: Medical Science Apps.',
    ],

    entry_points={
        "console_scripts": [
            "hasher = run.hasher:main",
            "linker = run.linker:main",
        ],
    },
)