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Training for ResFinderFG v2.0 db #58

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mtva0001 opened this issue Sep 3, 2024 · 1 comment

mtva0001 commented Sep 3, 2024

Hi!
Would it be possible to use ResFinderFG db as custom db to find ARG-related proteins?
The db is available here:
https://github.com/RemiGSC/ResFinder_FG_Construction/blob/main/output/RFG_db/ResFinder_FG_AA.faa

Thanks for your response in advance!

Collaborator

VarIr commented Jan 20, 2025

Hi, I'm not an expert in ARGs, but a few thoughts:

From a purely technical perspective, nothing speaks against trying this. Since there's not too much data here, training also should not take long. Feel free to try yourself!
I wonder whether the problems of assigning orthologous groups and finding ARGs are similar enough. It's unclear if deepnog is well suited for your task. I assume more specialized tools should be available.

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