Can I convert the czi file to DZI file with the pyramidio tools?

[Easy106]

Hello!
Can I convert the czi file to DZI file with the pyramidio tools?

[avandecreme]

Hi!

We do not have a CZI reader.
If you are willing to write the reader, you should probably take example on the DeepZoomImageReader.
Once this is done you should be able to convert from CZI to DZI like this:

ScalablePyramidBuilder spb = new ScalablePyramidBuilder(tileSize, tileOverlap, tileFormat, "dzi");
FilesArchiver archiver = new DirectoryArchiver(outputFolder);
PartialImageReader pir = new CZIReader(cziFile);
spb.buildPyramid(pir, "pyramidName", archiver, parallelism);

[darwinjob]

You will need bio-formats library to read Zeiss CZI:
https://docs.openmicroscopy.org/bio-formats/5.9.2/formats/zeiss-czi.html
Check out this post:
https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=8167
This should work for CZI as well.