pyproject.toml

[build-system]
requires = ["setuptools", "setuptools-scm"]
build-backend = "setuptools.build_meta"

[project]
name = "mood"
description = "A python library to accompany the MOOD paper from Tossou et al. (2023)"
authors = [{ name = "Cas Wognum", email = "cas@valencediscovery.com" }]
readme = "README.md"
dynamic = ["version"]
requires-python = ">=3.10,<3.11"
license = { text = "Apache" }
classifiers = [
    "Development Status :: 2 - Pre-Alpha",
    "Intended Audience :: Developers",
    "Intended Audience :: Healthcare Industry",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Information Analysis",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
    "Natural Language :: English",
    "Operating System :: OS Independent",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
]

dependencies = [
    "pandas",
    "matplotlib",
    "scikit-learn",
    "torchmetrics",
    "pytorch-lightning <2.0",
    "torch >=1.10.2",
    "numpy <1.24",
    "tqdm",
    "optuna",
    "datamol",
    "notebook",
    "pytdc",
    "typer",
    "gcsfs",
    "pyarrow",
    "fastparquet",
    "transformers",
]

[project.scripts]
mood = "mood.__main__:app"

[tool.black]
line-length = 110
target-version = ['py310']
include = '\.pyi?$'

[project.urls]
"Source Code" = "https://github.com/cwognum/mood-experiments/tree/main"
"Paper" = "TODO"

[tool.setuptools]
include-package-data = true

[tool.setuptools_scm]
fallback_version = "dev"

[tool.setuptools.packages.find]
where = ["."]
include = ["mood", "mood.*", "scripts", "scripts.*"]
exclude = []
namespaces = true