README.md

cookiecutter-snakemake-workflow

A cookiecutter template for snakemake workflows.

Usage

Make sure you have the cookiecutter package installed via pip.

If not:

pip install cookiecutter or pip install --user cookiecutter

Clone cookiecutter-snakemake-workflow

[username@doserver]$ cookiecutter gh:vallenderlab/cookiecutter-snakemake-workflow

Use the already cloned cookiecutter by name

[username@doserver]$ cookiecutter cookiecutter-snakemake-workflow