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female sex determination is correct, but called as error #1623

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flokraft85 opened this issue May 13, 2024 · 3 comments
Open

female sex determination is correct, but called as error #1623

flokraft85 opened this issue May 13, 2024 · 3 comments
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bug Something isn't working

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@flokraft85
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Describe the bug
As QC feature VarFish compare the sex of the ped file with the het. call ratio on chromosome X. Althoug males and females are cluster on the rigth side of the plot, females are shown in red and as error.

To Reproduce
Steps to reproduce the behavior:

  1. Open a case
  2. click on Quality Control

Expected behavior
Females should be not calles as "error".

Screenshots
grafik

@flokraft85 flokraft85 added the bug Something isn't working label May 13, 2024
@xiamaz
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xiamaz commented May 16, 2024

@flokraft85 Which mehari version did you use for annotation?

@xiamaz xiamaz self-assigned this May 16, 2024
@flokraft85
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Hi @xiamaz,
we use the latest version. 0.25.5.

Best,
Florian

@xiamaz
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xiamaz commented May 16, 2024

@holtgrewe mehari version should be fine. Any other ideas?

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