Phophopeptide quantification

[cutleraging]

Hello,

Thanks for the great package. I have a phosphopeptide enrichment dataset. I am wondering how I can convert the diann_output.tsv to a table of phosphosites and their associated intensities.

Thanks,
Ronnie

[vdemichev]

Hi Ronnie,

Sorry for the super late reply. Please try DIA-NN 1.9, it does output phosphosite table in a convenient ready-to-use format.

Best,
Vadim