.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*,cover

# Translations
*.mo
*.pot

# Django stuff:
*.log

# Sphinx documentation
docs/_build/

# PyBuilder
target/

hivtrace/rsrc/LANL.FASTA
hivtrace/rsrc/LANL.TN93OUTPUT.csv
test/rsrc/HIV1_ALL_2013_env_DNA.fasta_output.fasta
test/rsrc/TEST.ALIGNED.FASTA_output.fasta
test/rsrc/TEST.ALIGNED.FASTA_user.tn93output.csv
test/rsrc/TEST.FASTA_output.fasta
test/rsrc/TEST2.FASTA_output.fasta
test/rsrc/TEST2.FASTA_user.tn93output.csv
node_modules
hivtrace/web/static/vendor/

example.fasta
example.fasta.results.json
example.fasta_output.fasta
example.fasta_user.tn93output.csv
test/rsrc/CONTAM.fasta_output.fasta
test/rsrc/CONTAM.fasta_user.tn93output.csv
test/rsrc/HIV1_ALL_2013_env_DNA.fasta_user.tn93output.csv
test/rsrc/TEST.FASTA.results.json
test/rsrc/filtered_list
test/rsrc/hello.js
test/rsrc/hiv1.fasta
test/rsrc/hiv1.fasta.results.json
test/rsrc/hiv1.fasta_output.fasta
test/rsrc/hiv1.fasta_user.tn93output.csv
test/rsrc/results.json