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notebooks

Tutorials

In this folder you will find:

  • Examples to download and build a CellphoneDB database. Notebooks starting with T0.
  • Examples to run the different methods available in CellphoneDB and some basic plottings. Notebooks starting with T01.
  • The data required to run the examples within a zip compressed file data-tutorial.zip
  • Examples to prepare your DEGs file scanpy/anndata for CellphoneDB. DEGs_calculation folder.