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Draft Changelog

Adam Novak edited this page Jul 30, 2024 · 449 revisions

This page tracks all changes since the last release of VG.

When you merge a PR, add a bullet point to this page.

When you do a release, copy the changelog from this page and clear it out.

Changes For Next Release

  • Experimental haploid scoring model for haplotype sampling.
  • Faster BAM output when using a GBZ format graph
  • vg inject no longer reports invalid alignments
  • vg giraffe --parameter-preset long-form option should now work again
  • vg surject now complains if extra command line arguemnts are provided
  • vg Mac builds no longer pass -headerpad without an argument to the linker
  • vg giraffe in non-chaining single-end mode will again prioritize minimizers the same way as in paired-end mode
  • README no longer interpretable as suggesting that users build with very old Clang
  • vg surject now uses an unlimited --max-anchors by default
  • vg clip faster on graphs with high path depth
  • vg surject has improved base-level alignment accuracy with long reads
  • Random walk band padding is now available outside MultipathAligner
  • Gapless extension queue order should no longer cause vg giraffe output to very across compilers
  • vg giraffe --show-work no longer claims to not be doing rescue when it is

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