pyproject.toml

[tool.poetry]
name = "ref-builder"
version = "0.0.0"
description = ""
authors = ["Ian Boyes <igboyes@gmail.com>", "Shelley Gao"]
license = "MIT"
maintainers = ["Ian Boyes <igboyes@gmail.com>"]
readme = "readme.md"

[tool.poetry.dependencies]
python = "^3.12"
arrow = "^1.3.0"
biopython = "^1.84"
click = "^8.1.7"
orjson = "^3.10.6"
pydantic = "^2.8.2"
requests = "^2.32.3"
rich = "^13.7.1"
structlog = "^24.2.0"
platformdirs = "^4.2.2"


[tool.poetry.group.dev.dependencies]
faker = "^32.1.0"
polyfactory = "^2.16.2"
pytest = "^8.2.2"
pytest-mock = "^3.14.0"
pytest-socket = "^0.7.0"
pytest-structlog = "^1.0"
pytest-xdist = "^3.6.1"
ruff = "^0.5.2"
syrupy = "^4.6.1"

[tool.poetry.scripts]
ref-builder = "ref_builder.cli.main:entry"

[tool.pytest.ini_options]
markers = [
    "ncbi: test requires request to NCBI"
]

[tool.ruff]
target-version = "py312"

[tool.ruff.lint]
select = ["ALL"]
ignore = ["ANN101", "COM812", "D203", "D205", "D213", "EM101", "EM102", "FBT001", "FBT003", "ISC001", "PTH123", "TRY003"]

[tool.ruff.lint.per-file-ignores]
"tests/**" = ["ANN201", "ANN202", "D205", "PLR2004", "S101", "S106"]

# Don't require imperative mood for test fixtures.
"tests/conftest.py"= ["D401"]

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"