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add frbs + gcmr extensions to recent R-bundle-CRAN easyconfigs #21993

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add frbs + gcmr extensions to recent R-bundle-CRAN easyconfigs #21993

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@pavelToman pavelToman commented Dec 9, 2024 •
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(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#471

add gcmr to 2023a bundle as dependency of scNanoGPS for vscentrum/vsc-software-stack#467

@github-actions github-actions bot added the change label Dec 9, 2024
@pavelToman pavelToman mentioned this pull request Dec 9, 2024
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@boegelbot please test @ generoso

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@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21993 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21993 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 14838

Test results coming soon (I hope)...

- notification for comment with ID 2528476053 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @pavelToman
FAILED
Build succeeded for 1 out of 2 (2 easyconfigs in total)
node4012.donphan.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 545.23.08, Python 3.6.8
See https://gist.github.com/pavelToman/b080793b5f1c170fa42a174cc4d7fa37 for a full test report.

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Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/52d95ffaac73b811173d01b3c0d08f1c for a full test report.

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@boegelbot please test @ jsc-zen3

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@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21993 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21993 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 5418

Test results coming soon (I hope)...

- notification for comment with ID 2530940886 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.19
See https://gist.github.com/boegelbot/737b57cde5610b3791a157feacab7d75 for a full test report.

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boegel commented Dec 11, 2024

Test report by @pavelToman FAILED Build succeeded for 1 out of 2 (2 easyconfigs in total) node4012.donphan.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 545.23.08, Python 3.6.8 See https://gist.github.com/pavelToman/b080793b5f1c170fa42a174cc4d7fa37 for a full test report.

@pavelToman What happened here? Maybe you have something installed in your home directory?

Error: renv 1.0.3 not installed, found 1.0.7.9000 instead

@boegel boegel changed the title add more packeges to R-bundle-CRAN add frbs + gcmr extensions to recent R-bundle-CRAN easyconfigs Dec 11, 2024
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boegel approved these changes Dec 11, 2024
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lgtm

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boegel commented Dec 11, 2024

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3102.skitty.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.9.18
See https://gist.github.com/boegel/94e02ede89f792388fa2f49bab937908 for a full test report.

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Test report by @pavelToman FAILED Build succeeded for 1 out of 2 (2 easyconfigs in total) node4012.donphan.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 545.23.08, Python 3.6.8 See https://gist.github.com/pavelToman/b080793b5f1c170fa42a174cc4d7fa37 for a full test report.

@pavelToman What happened here? Maybe you have something installed in your home directory?

Error: renv 1.0.3 not installed, found 1.0.7.9000 instead

Yes, problem was in my HOME. Gonna run it again.

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frbs add to CRAN
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