pyproject.toml

[tool.poetry]
name = "clubcpg"
version = "0.3.0"
description = "CluBCpG is a software package built to analyze whole genome bisulfite sequencing (WGBS) data."
authors = ["Anthony Scott, PhD <anthony@canthonyscott.com>"]
license = "MIT"
readme = "README.md"
packages = [
    { include = "clubcpg" },
    { include = "clubcpg_prelim" },
    { include = "clubcpg_bin" },
]
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
    "Operating System :: POSIX :: Linux",
    "Operating System :: POSIX",
    "Intended Audience :: Science/Research",
    "Natural Language :: English",
    "Topic :: Scientific/Engineering :: Bio-Informatics"
]

[tool.poetry.dependencies]
python = ">=3.9,<3.11"
numpy = "^1.25.0"
scikit-learn = "^1.3.0"
pysam = "^0.21.0"
scipy = "^1.11.1"
joblib = "^1.3.1"
fastcluster = "^1.2.6"
pebble = "^5.0.3"
tqdm = "^4.65.0"
pandas = "^2.0.3"


[tool.poetry.scripts]
clubcpg-coverage = "clubcpg_bin.clubcpg_coverage:cli"
clubcpg-cluster = "clubcpg_bin.clubcpg_cluster:cli"
clubcpg-impute-cluster = "clubcpg_bin.clubcpg_impute_cluster:cli"
clubcpg-impute-coverage = "clubcpg_bin.clubcpg_impute_coverage:cli"
clubcpg-impute-train = "clubcpg_bin.clubcpg_impute_train:cli"

[tool.poetry.group.docs]
optional = true

[tool.poetry.group.docs.dependencies]
sphinx = ">=1.6,<7"
sphinx-argparse = "^0.4.0"
sphinx-rtd-theme = "^1.2.2"
sphinxcontrib-autoprogram = "^0.1.8"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"