feat(cli): support for multiple paths in any position

[wellwelwel]

This PR deprecates the --include flag due to default support for multiple paths in any position.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 100.00%. Comparing base (8dae9f3) to head (3907e2d).

Additional details and impacted files

@@            Coverage Diff            @@
##              main      #562   +/-   ##
=========================================
  Coverage   100.00%   100.00%           
=========================================
  Files           26        26           
  Lines         2317      2280   -37     
  Branches       456       456           
=========================================
- Hits          2317      2280   -37     

Flag	Coverage Δ
linux	99.25% <100.00%> (-0.02%)	⬇️
osx	100.00% <100.00%> (ø)
windows	100.00% <100.00%> (ø)

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