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scCancer: a package for automated processing of single cell RNA-seq data in cancer

Tutorials

1. Introduction
2. Installation
3. Quick start
4. Step-by-step introduction
5. Other personalized settings
6. Session Information

Example reports

• The example HTML reports of scCancer single-sample analyses:

  • report-scStat.html
  • report-scAnno.html

• An example HTML report of scCancer multi-sample integration analyses:

  • report-scAnnoComb.html

Workflow

Citation

Wenbo Guo, Dongfang Wang, Shicheng Wang, Yiran Shan, Changyi Liu, Jin Gu, scCancer: a package for automated processing of single-cell RNA-seq data in cancer, Briefings in Bioinformatics, bbaa127, https://doi.org/10.1093/bib/bbaa127

License

GPL-3