exon-benchmarks

Exon Benchmarks

This page describes the benchmarks for Exon.

UniProt Non-Methionine Amino Acid Counts

This benchmarks shows the performance of counting the number of amino acids from uniprot that do not start with methionine.

UniProt has about 560k sequences.

VCF Query

This benchmark shows querying a 2.6G VCF file for a genomic region.

BAM Query

This benchmark shows querying a 303M BAM file for a genomic region.

MzML Scan

This benchmark shows scanning an MzML file with roughly 6k spectra.

Per-File Parallel FASTA Scan

This benchmark shows scanning 8 FASTA files at different levels of parallelism.