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policy 1.ttl
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policy 1.ttl
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@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix sd: <http://www.w3.org/ns/sparql-service-description#> .
@prefix v: <http://rdf.data-vocabulary.org/#> .
@prefix odrl: <http://www.w3.org/ns/odrl/2/> .
@prefix occe: <https://w3id.org/odrl-occe/> .
@prefix dpv: <https://w3id.org/dpv#> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix cc: <http://creativecommons.org/ns#> .
@prefix vcard: <http://www.w3.org/2006/vcard/ns#> .
@prefix this: <https://example.com/> .
<https://example.com/policies/1> rdf:type odrl:Offer ;
dct:issued "2023-05-28"^^xsd:date ;
odrl:permission <https://example.com/policies/1/permissions/1>, <https://example.com/policies/1/permissions/2>, <https://example.com/policies/1/permissions/3>, <https://example.com/policies/1/permissions/4>, <https://example.com/policies/1/permissions/5>, <https://example.com/policies/1/permissions/6>, <https://example.com/policies/1/permissions/7>, <https://example.com/policies/1/permissions/8> ;
odrl:prohibition <https://example.com/policies/1/prohibitions/1>, <https://example.com/policies/1/prohibitions/2> ;
odrl:obligation <https://example.com/policies/1/obligations/1>, <https://example.com/policies/1/obligations/2>, <https://example.com/policies/1/obligations/3>, <https://example.com/policies/1/obligations/4>, <https://example.com/policies/1/obligations/5>, <https://example.com/policies/1/obligations/6>, <https://example.com/policies/1/obligations/7>, <https://example.com/policies/1/obligations/8> .
# Permissions
## Permission 1: To allow the return of clinical relevant results to the participants.
# Translation: Permission to use and deanonymize only if clinical relevant results are returned to the participants, through the resource provider.
<https://example.com/policies/1/permissions/1> dct:subject "reidentification_of_individuals_with_irp" ;
odrl:target <https://example.com/policies/1/permissions/1/targets/1> ;
odrl:action <https://example.com/policies/1/permissions/1/actions/1> ;
odrl:duty <https://example.com/policies/1/permissions/1/duties/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/permissions/1/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/permissions/1/actions/1> rdf:value <http://purl.obolibrary.org/obo/T4FS_0000501> ; # De-anonymization
odrl:refinement <https://example.com/policies/1/permissions/1/actions/1/refinements/1> .
<https://example.com/policies/1/permissions/1/actions/1/refinements/1> odrl:leftOperand <http://purl.obolibrary.org/obo/NCIT_C25548> ; # Involvment
odrl:operator odrl:isA ;
odrl:rightOperand this:Data_Center_01 .
<https://example.com/policies/1/permissions/1/duties/1> odrl:target <https://example.com/policies/1/permissions/1/duties/1/targets/1> ;
odrl:action <https://example.com/policies/1/permissions/1/duties/1/actions/1> ;
occe:sharedParty <https://example.com/policies/1/permissions/1/duties/1/sharedParties/1> ;
odrl:constraint <https://example.com/policies/1/permissions/1/duties/1/constraints/1> .
<https://example.com/policies/1/permissions/1/duties/1/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C77140>, odrl:AssetCollection ; # Clinical test result
dct:title "Clinical test results"^^xsd:string .
<https://example.com/policies/1/permissions/1/duties/1/sharedParties/1> a <http://purl.obolibrary.org/obo/NCIT_C29867>, odrl:PartyCollection ; # Participant
vcard:fn "Patients"^^xsd:string .
<https://example.com/policies/1/permissions/1/duties/1/actions/1> rdf:value odrl:share .
<https://example.com/policies/1/permissions/1/duties/1/constraints/1> odrl:leftOperand odrl:event ;
odrl:operator odrl:gteq ;
odrl:rightOperand odrl:policyUsage .
## Permission 2: Use for diagnosis purpose, only if a specific authorisation in the informed consent is present.
# Translation: Permission to use the patients data only for clinical care purpose. Consent must be obtained before using the data.
<https://example.com/policies/1/permissions/2> dct:subject "clinical_care" ;
odrl:target <https://example.com/policies/1/permissions/2/targets/1> ;
odrl:action <https://example.com/policies/1/permissions/2/actions/1> ;
odrl:duty <https://example.com/policies/1/permissions/2/duties/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/permissions/2/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/permissions/2/actions/1> rdf:value odrl:use ;
odrl:refinement <https://example.com/policies/1/permissions/2/actions/1/refinements/1> .
<https://example.com/policies/1/permissions/2/actions/1/refinements/1> odrl:leftOperand odrl:purpose ;
odrl:operator odrl:isA ;
odrl:rightOperand <http://purl.obolibrary.org/obo/DUO_0000043> . # Clinical care use
<https://example.com/policies/1/permissions/2/duties/1> odrl:action <https://example.com/policies/1/permissions/2/duties/1/actions/1> ;
odrl:constraint <https://example.com/policies/1/permissions/2/duties/1/constraints/1> ;
odrl:consentingParty this:Data_Center_01 .
<https://example.com/policies/1/permissions/2/duties/1/actions/1> rdf:value odrl:obtainConsent .
<https://example.com/policies/1/permissions/2/duties/1/constraints/1> odrl:leftOperand odrl:event ;
odrl:operator odrl:lt ;
odrl:rightOperand odrl:policyUsage .
## Permission 3: use for research purposes, including research to improve diagnosis and treatment, in the field of the disease for which the biological materials have been biobanked. Specific authorisation in the informed consent is mandatory.
# Translation: Permission to use patients data for research purposes in the field of the disease. Consent must be obtained before using the data.
<https://example.com/policies/1/permissions/3> dct:subject "clinical_research_use" ;
odrl:target <https://example.com/policies/1/permissions/3/targets/1> ;
odrl:action <https://example.com/policies/1/permissions/3/actions/1> ;
odrl:duty <https://example.com/policies/1/permissions/3/duties/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/permissions/3/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/permissions/3/actions/1> rdf:value odrl:use ;
odrl:refinement <https://example.com/policies/1/permissions/3/actions/1/refinements/1> .
<https://example.com/policies/1/permissions/3/actions/1/refinements/1> odrl:leftOperand odrl:purpose ;
odrl:operator odrl:isAllOf ;
odrl:rightOperand <http://purl.obolibrary.org/obo/GSSO_012789>, <http://www.ebi.ac.uk/efo/EFO_0000408> . ## Clinical research / Any disease
<https://example.com/policies/1/permissions/3/duties/1> odrl:action <https://example.com/policies/1/permissions/3/duties/1/actions/1> ;
odrl:consentingParty this:Data_Center_01 .
<https://example.com/policies/1/permissions/3/duties/1/actions/1> rdf:value odrl:obtainConsent .
## Permission 4 : Obtain consent if the country is not covered by GDPR.
<https://example.com/policies/1/permissions/4> dct:subject "geographical_area" ;
odrl:target <https://example.com/policies/1/permissions/4/targets/1> ;
odrl:action <https://example.com/policies/1/permissions/4/actions/1> ;
odrl:duty <https://example.com/policies/1/permissions/4/duties/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/permissions/4/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/permissions/4/actions/1> rdf:value odrl:use .
<https://example.com/policies/1/permissions/4/duties/1> odrl:action <https://example.com/policies/1/permissions/4/duties/1/actions/1> ;
odrl:consentingParty this:Data_Center_01 .
<https://example.com/policies/1/permissions/4/duties/1/actions/1> rdf:value odrl:obtainConsent ;
odrl:refinement <https://example.com/policies/1/permissions/4/duties/1/actions/1/refinements/1> .
<https://example.com/policies/1/permissions/4/duties/1/actions/1/refinements/1> odrl:leftOperand dpv:Law ;
odrl:operator odrl:isNoneOf ;
odrl:rightOperand <https://w3id.org/dpv/dpv-legal#EU-GDPR> . # EU-GDPR
## Permission 5 : Use in countries that are not covered by GDPR requires specific authorisation in the informed consent.
<https://example.com/policies/1/permissions/5> dct:subject "regulatory_jurisdiction" ;
odrl:target <https://example.com/policies/1/permissions/5/targets/1> ;
odrl:action <https://example.com/policies/1/permissions/5/actions/1> ;
odrl:duty <https://example.com/policies/1/permissions/5/duties/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/permissions/5/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/permissions/5/actions/1> rdf:value odrl:use .
<https://example.com/policies/1/permissions/5/duties/1> odrl:action <https://example.com/policies/1/permissions/5/duties/1/actions/1> ;
odrl:consentingParty this:Data_Center_01 ;
odrl:constraint <https://example.com/policies/1/permissions/5/duties/1/constraints/1> .
<https://example.com/policies/1/permissions/5/duties/1/actions/1> rdf:value odrl:obtainConsent .
<https://example.com/policies/1/permissions/5/duties/1/constraints/1> odrl:leftOperand dpv:Law ;
odrl:operator odrl:isNoneOf ;
odrl:rightOperand <https://w3id.org/dpv/dpv-legal#EU-GDPR> . # EU-GDPR
## Permission 6: use for research purposes in the field of the disease for which the biological materials have been stored in the biobank.
<https://example.com/policies/1/permissions/6> dct:subject "research_use" ;
odrl:target <https://example.com/policies/1/permissions/6/targets/1> ;
odrl:action <https://example.com/policies/1/permissions/6/actions/1> ;
odrl:constraint <https://example.com/policies/1/permissions/6/constraints/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/permissions/6/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/permissions/6/actions/1> rdf:value odrl:use ;
odrl:refinement <https://example.com/policies/1/permissions/6/actions/1/refinements/1> .
<https://example.com/policies/1/permissions/6/actions/1/refinements/1> odrl:leftOperand odrl:purpose ;
odrl:operator odrl:isA ;
odrl:rightOperand <http://purl.obolibrary.org/obo/DUO_0000042> . # General research use
<https://example.com/policies/1/permissions/6/constraints/1> odrl:leftOperand odrl:purpose ;
odrl:operator odrl:isAllOf ;
odrl:rightOperand <https://w3id.org/dpv#ResearchAndDevelopment>, <http://www.ebi.ac.uk/efo/EFO_0000408> . # R&D / Any disease
## Permission 7: Relating to the field of the disease for which the biological materials have been biobanked.
<https://example.com/policies/1/permissions/7> dct:subject "use_as_control" ;
odrl:target <https://example.com/policies/1/permissions/7/targets/1> ;
odrl:action <https://example.com/policies/1/permissions/7/actions/1> ;
odrl:constraint <https://example.com/policies/1/permissions/7/constraints/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/permissions/7/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/permissions/7/actions/1> rdf:value occe:useAsReference .
<https://example.com/policies/1/permissions/7/constraints/1> odrl:leftOperand odrl:purpose ;
odrl:operator odrl:isA ;
odrl:rightOperand <http://www.ebi.ac.uk/efo/EFO_0000408> . # Any disease
## Permission 8: Only if it has been authorised in the informed consent.
<https://example.com/policies/1/permissions/8> dct:subject "use_by_commercial_entity" ;
odrl:target <https://example.com/policies/1/permissions/8/targets/1> ;
odrl:action <https://example.com/policies/1/permissions/8/actions/1> ;
odrl:duty <https://example.com/policies/1/permissions/8/duties/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/permissions/8/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/permissions/8/actions/1> rdf:value cc:CommercialUse .
<https://example.com/policies/1/permissions/8/duties/1> odrl:action <https://example.com/policies/1/permissions/8/duties/1/actions/1> ;
odrl:consentingParty this:Data_Center_01 .
<https://example.com/policies/1/permissions/8/duties/1/actions/1> rdf:value odrl:obtainConsent .
# Prohibitions
## Prohibition 1
<https://example.com/policies/1/prohibitions/1> dct:subject "reidentification_of_individuals_without_irp" ;
odrl:target <https://example.com/policies/1/prohibitions/1/targets/1> ;
odrl:action <https://example.com/policies/1/prohibitions/1/actions/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/prohibitions/1/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/prohibitions/1/actions/1> rdf:value <http://purl.obolibrary.org/obo/T4FS_0000501> . # De-anonymization
## Prohibition 2
<https://example.com/policies/1/prohibitions/2> dct:subject "profit_motivated_use" ;
odrl:target <https://example.com/policies/1/prohibitions/2/targets/1> ;
odrl:action <https://example.com/policies/1/prohibitions/2/actions/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/prohibitions/2/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/prohibitions/2/actions/1> rdf:value cc:CommercialUse ;
odrl:refinement <https://example.com/policies/1/prohibitions/2/actions/1/refinements/1> .
<https://example.com/policies/1/prohibitions/2/actions/1/refinements/1> odrl:leftOperand odrl:purpose ;
odrl:operator odrl:isA ;
odrl:rightOperand <http://purl.obolibrary.org/obo/ICO_0000057> . # For-profit research investigation
# Obligations
## Obligation 1: Relating to the field of the disease for which the biological materials have been biobanked.
# Translation: Obligation to use data only for disease for which the biological materials have been biobanked.
<https://example.com/policies/1/obligations/1> dct:subject "disease_specific_use" ;
odrl:target <https://example.com/policies/1/obligations/1/targets/1> ;
odrl:action <https://example.com/policies/1/obligations/1/actions/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/obligations/1/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/obligations/1/actions/1> rdf:value odrl:use ;
odrl:refinement <https://example.com/policies/1/obligations/1/actions/1/refinements/1> .
<https://example.com/policies/1/obligations/1/actions/1/refinements/1> odrl:leftOperand odrl:purpose ;
odrl:operator odrl:isA ;
odrl:rightOperand <http://www.ebi.ac.uk/efo/EFO_0000408> . # Any disease
## Obligation 2 : Obligation to include the IRB document with IRB's name, protocol number and IRB approval date.
<https://example.com/policies/1/obligations/2> dct:subject "ethics_approval" ;
odrl:target <https://example.com/policies/1/obligations/2/targets/1> ;
odrl:action <https://example.com/policies/1/obligations/2/actions/1> ;
odrl:assigner this:Data_Center_01 .
occe:sharedParty a this:Data_Center_01 .
<https://example.com/policies/1/obligations/2/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C70800>, odrl:Asset ;
dct:title "Institutional Review Board approval document"^^xsd:string .
<https://example.com/policies/1/obligations/2/actions/1> rdf:value odrl:share .
## Obligation 3 : Obligation to pay fees (not applicable for collaboration projects).
<https://example.com/policies/1/obligations/3> dct:subject "fees" ;
odrl:action <https://example.com/policies/1/obligations/3/actions/1> ;
odrl:constraint <https://example.com/policies/1/obligations/3/constraints/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/obligations/3/actions/1> rdf:value odrl:compensate .
<https://example.com/policies/1/obligations/3/constraints/1> odrl:leftOperand odrl:purpose ;
odrl:operator odrl:isNoneOf ;
odrl:rightOperand <http://purl.obolibrary.org/obo/NCIT_C73529> . # Collaboration
## Obligation 4 : The recipient agrees to make available to the resource the paper reprint (or pdf format) in case of publication. The recipients is asked to acknowledge the biobank in their publication.
<https://example.com/policies/1/obligations/4> dct:subject "publication" ;
odrl:target <https://example.com/policies/1/obligations/4/targets/1>, <https://example.com/policies/1/obligations/4/targets/2> ;
odrl:action <https://example.com/policies/1/obligations/4/actions/1>, <https://example.com/policies/1/obligations/4/actions/2>, <https://example.com/policies/1/obligations/4/actions/3> ;
odrl:constraint <https://example.com/policies/1/obligations/4/constraints/1> ;
odrl:assigner this:Data_Center_01 ;
occe:acknowledgedParty <https://example.com/policies/1/obligations/4/acknowledgedParties/1> .
<https://example.com/policies/1/obligations/4/targets/1> a <http://purl.org/dc/terms/PhysicalMedium>, odrl:Asset ; # Physical Medium
dct:title "Paper reprint"^^xsd:string .
<https://example.com/policies/1/obligations/4/targets/2> a <http://purl.org/dc/terms/FileFormat>, odrl:Asset ; # File format
dct:title "PDF"^^xsd:string .
<https://example.com/policies/1/obligations/4/acknowledgedParties/1> a <http://edamontology.org/topic_3337>, odrl:Party ; # Biobank
vcard:fn "Biobank"^^xsd:string .
<https://example.com/policies/1/obligations/4/actions/1> rdf:value <http://purl.obolibrary.org/obo/NCIT_C19026> . # Publication
<https://example.com/policies/1/obligations/4/actions/2> rdf:value cc:Attribution .
<https://example.com/policies/1/obligations/4/actions/3> rdf:value odrl:share .
<https://example.com/policies/1/obligations/4/constraints/1> odrl:leftOperand odrl:event ;
odrl:operator odrl:gteq ;
odrl:rightOperand odrl:policyUsage .
## Obligation 5: Only for results that are relevant to the health of the participant.
<https://example.com/policies/1/obligations/5> dct:subject "return_of_incidental_findings" ;
odrl:action <https://example.com/policies/1/obligations/5/actions/1> ;
odrl:constraint <https://example.com/policies/1/obligations/5/constraints/1> ;
odrl:assigner this:Data_Center_01 ;
occe:sharedParty this:Data_Center_01 .
<https://example.com/policies/1/obligations/5/actions/1> rdf:value odrl:share ;
odrl:refinement <https://example.com/policies/1/obligations/5/actions/1/refinements/1> .
<https://example.com/policies/1/obligations/5/actions/1/refinements/1> odrl:leftOperand dpv:Context ; # Context
odrl:operator odrl:isA ;
odrl:rightOperand <http://purl.obolibrary.org/obo/OMIT_0022412> . # Incidental Findings
<https://example.com/policies/1/obligations/5/constraints/1> odrl:leftOperand odrl:purpose ;
odrl:operator odrl:isA ;
odrl:rightOperand <http://purl.obolibrary.org/obo/NCIT_C25746> . # Recovry
## Obligation 6: The recipient shall make available in confidence to the resource a final report of the results of the project.
<https://example.com/policies/1/obligations/6> dct:subject "return_of_results" ;
odrl:target <https://example.com/policies/1/obligations/6/targets/1> ;
odrl:action <https://example.com/policies/1/obligations/6/actions/1> ;
odrl:assigner this:Data_Center_01 ;
occe:sharedParty this:Data_Center_01 .
<https://example.com/policies/1/obligations/6/targets/1> a <http://purl.obolibrary.org/obo/IAO_0000088>, odrl:Asset ; # Report
dct:title "Report of the results of the project"^^xsd:string .
<https://example.com/policies/1/obligations/6/actions/1> rdf:value odrl:share .
## Obligation 7: The recipient is permitted to use the biological material until completion of the project for which the material has been required to the biobank.
# Translation: Obligation to use the data only during the study (project).
<https://example.com/policies/1/obligations/7> dct:subject "time_period_of_use" ;
odrl:target <https://example.com/policies/1/obligations/7/targets/1> ;
odrl:action <https://example.com/policies/1/obligations/7/actions/1> ;
odrl:constraint <https://example.com/policies/1/obligations/7/constraints/1> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/obligations/7/targets/1> a <http://purl.obolibrary.org/obo/NCIT_C25474>, odrl:AssetCollection ; # Data
dct:title "Patients' data"^^xsd:string .
<https://example.com/policies/1/obligations/7/actions/1> rdf:value odrl:use .
<https://example.com/policies/1/obligations/7/constraints/1> odrl:leftOperand odrl:event ;
odrl:operator odrl:eq ;
odrl:rightOperand <http://purl.obolibrary.org/obo/NCIT_C164420> . # Project conduct
## Obligation 8 (User authentication): To request biological materials the recipient should register to the resource website and to fill in a specific form.
# Translation: 1) Obligation to register. 2) Obligation to request biospecimens through the website.
<https://example.com/policies/1/obligations/8> dct:subject "user_authentication" ;
odrl:action <https://example.com/policies/1/obligations/8/actions/1>, <https://example.com/policies/1/obligations/8/actions/2> ;
odrl:assigner this:Data_Center_01 .
<https://example.com/policies/1/obligations/8/actions/1> rdf:value <http://schema.org/RegisterAction> . # Register Action
<https://example.com/policies/1/obligations/8/actions/2> rdf:value <http://purl.obolibrary.org/obo/NCIT_C97566> ; # Fill out form
odrl:refinement <https://example.com/policies/1/obligations/8/actions/1/refinements/1> .
<https://example.com/policies/1/obligations/8/actions/1/refinements/1> odrl:leftOperand odrl:purpose ;
odrl:operator odrl:isA ;
odrl:rightOperand <http://purl.obolibrary.org/obo/NCIT_C70699> . # Biospecimen