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Spliced and Unspliced Reads Information #176

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cinnamon6 opened this issue Jan 9, 2024 · 2 comments
Open

Spliced and Unspliced Reads Information #176

cinnamon6 opened this issue Jan 9, 2024 · 2 comments

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@cinnamon6
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Hello!
I was wondering if it is possible to retrieve the spliced and unspliced reads information (basically the numerator and denominator values using which the IRratio is calculated).
@dg520
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dg520 commented Jan 18, 2024

@cinnamon6 Yes, those values are in the IRFinder output file. Please refer to this and see how the value in Column 20 (i.e. IR ratio) is calculated from the values in Columns 8, 9, 17 and 18.

@cinnamon6
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Thank you for your reply!
Apart from the intron depth, is it possible to get the counts information at the introns as well?

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@dg520 @cinnamon6