main.tex

%
\documentclass[12pt]{ociamthesis}  % default square logo 
%\documentclass[12pt,beltcrest]{ociamthesis} % use old belt crest logo
%\documentclass[12pt,shieldcrest]{ociamthesis} % use older shield crest logo

%input header with packages and macros
\include{header}
\include{packages/Qcircuit}
%\usepackage[inline]{showlabels}





\title{The Abstract Structure of \\[1ex] Quantum Algorithms}

\author{William J. Zeng} %your name
\college{Oriel College}  %your college

%\renewcommand{\submittedtext}{change the default text here if needed}
\degree{Doctor of Philosophy}     %the degree
\degreedate{Trinity 2015}         %the degree date

%end the preamble and start the document
\usepackage{graphicx}
\usepackage{amsmath}

\begin{document}

%this baselineskip gives sufficient line spacing for an examiner to easily
%markup the thesis with comments
\baselineskip=18pt plus1pt

%set the number of sectioning levels that get number and appear in the contents
\setcounter{secnumdepth}{3}
\setcounter{tocdepth}{3}

\pagenumbering{gobble}
\maketitle                  % create a title page from the preamble info
\pagenumbering{arabic}
\include{dedication}        % include a dedication.tex file
\include{acknowlegements}   % include an acknowledgements.tex file
\include{abstract}          % include the abstract

\begin{romanpages}          % start roman page numbering
\tableofcontents            % generate and include a table of contents
\listoffigures              % generate and include a list of figures
\include{nomenclature}      % include list of abbrev.
\end{romanpages}            % end roman page numbering

%now include the files of latex for each of the chapters etc
\include{overview}
\include{Introduction}
\include{cqm}

\include{qalgs}

\include{Mermin}
\include{QAlgDisCo}
\include{outlook}

%now enable appendix numbering format and include any appendices
\appendix
\include{appendix1}

%next line adds the Bibliography to the contents page
\addcontentsline{toc}{chapter}{Bibliography}
%uncomment next line to change bibliography name to references
\renewcommand{\bibname}{References}
\bibliography{thesis}        %use a bibtex bibliography file refs.bib
\bibliographystyle{plain}  %use the plain bibliography style

\end{document}