forked from tikk3r/flocs
-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathrun_simple_tests_py2.sh
116 lines (95 loc) · 4.58 KB
/
run_simple_tests_py2.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
# Reset
Color_Off='\033[0m' # Text Reset
# Regular Colors
Black='\033[0;30m' # Black
Red='\033[0;31m' # Red
Green='\033[0;32m' # Green
Yellow='\033[0;33m' # Yellow
Blue='\033[0;34m' # Blue
Purple='\033[0;35m' # Purple
Cyan='\033[0;36m' # Cyan
White='\033[0;37m' # White
# Bold
BBlack='\033[1;30m' # Black
BRed='\033[1;31m' # Red
BGreen='\033[1;32m' # Green
BYellow='\033[1;33m' # Yellow
BBlue='\033[1;34m' # Blue
BPurple='\033[1;35m' # Purple
BCyan='\033[1;36m' # Cyan
BWhite='\033[1;37m' # White
# Underline
UBlack='\033[4;30m' # Black
URed='\033[4;31m' # Red
UGreen='\033[4;32m' # Green
UYellow='\033[4;33m' # Yellow
UBlue='\033[4;34m' # Blue
UPurple='\033[4;35m' # Purple
UCyan='\033[4;36m' # Cyan
UWhite='\033[4;37m' # White
# Background
On_Black='\033[40m' # Black
On_Red='\033[41m' # Red
On_Green='\033[42m' # Green
On_Yellow='\033[43m' # Yellow
On_Blue='\033[44m' # Blue
On_Purple='\033[45m' # Purple
On_Cyan='\033[46m' # Cyan
On_White='\033[47m' # White
# High Intensity
IBlack='\033[0;90m' # Black
IRed='\033[0;91m' # Red
IGreen='\033[0;92m' # Green
IYellow='\033[0;93m' # Yellow
IBlue='\033[0;94m' # Blue
IPurple='\033[0;95m' # Purple
ICyan='\033[0;96m' # Cyan
IWhite='\033[0;97m' # White
# Bold High Intensity
BIBlack='\033[1;90m' # Black
BIRed='\033[1;91m' # Red
BIGreen='\033[1;92m' # Green
BIYellow='\033[1;93m' # Yellow
BIBlue='\033[1;94m' # Blue
BIPurple='\033[1;95m' # Purple
BICyan='\033[1;96m' # Cyan
BIWhite='\033[1;97m' # White
# High Intensity backgrounds
On_IBlack='\033[0;100m' # Black
On_IRed='\033[0;101m' # Red
On_IGreen='\033[0;102m' # Green
On_IYellow='\033[0;103m' # Yellow
On_IBlue='\033[0;104m' # Blue
On_IPurple='\033[0;105m' # Purple
On_ICyan='\033[0;106m' # Cyan
On_IWhite='\033[0;107m' # White
SIMG=$1
printf ${Green}"Running test 1 / 2 - software builds\n"${Color_Off}
printf ${Cyan}"AOFlagger: "${Color_Off}
singularity exec $SIMG aoflagger --version 2>&1 > /dev/null && printf ${Green}"OK\n"${Color_Off}|| printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"Difmap: "${Color_Off}
singularity exec $SIMG which difmap > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off}|| printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"DPPP: "${Color_Off}
singularity exec $SIMG DPPP > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off}|| printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"DS9: "${Color_Off}
singularity exec $SIMG ds9 -help > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off}|| printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"Generic Pipeline: "${Color_Off}
singularity exec $SIMG genericpipeline.py -h | grep "LOFAR/WSRT pipeline framework" > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off}|| printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"LoSoTo: "${Color_Off}
singularity exec $SIMG /opt/lofar/pyenv-py2/bin/losoto -h > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off}|| printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"LSMTool: "${Color_Off}
singularity exec $SIMG /opt/lofar/pyenv-py2/bin/lsmtool -h > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off}|| printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"WSClean: "${Color_Off}
singularity exec $SIMG wsclean --version 2>&1 > /dev/null && printf ${Green}"OK\n"${Color_Off}|| printf ${Red}"FAIL\n"${Color_Off}
printf "\n"
printf ${Green}"Running test 2 / 2 - python imports\n"${Color_Off}
printf ${Cyan}"Python-casacore: "${Color_Off}
singularity exec $SIMG /opt/lofar/pyenv-py2/bin/python -c "import casacore" > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off} || printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"LoSoTo: "${Color_Off}
singularity exec $SIMG /opt/lofar/pyenv-py2/bin/python -c "import losoto" > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off} || printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"LOFARBeam: "${Color_Off}
singularity exec $SIMG /opt/lofar/pyenv-py2/bin/python -c "import lofar.stationresponse" > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off} || printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"LSMTool: "${Color_Off}
singularity exec $SIMG /opt/lofar/pyenv-py2/bin/python -c "import lsmtool" > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off} || printf ${Red}"FAIL\n"${Color_Off}
printf ${Cyan}"RMextract: "${Color_Off}
singularity exec $SIMG /opt/lofar/pyenv-py2/bin/python -c "import RMextract" > /dev/null 2>&1 && printf ${Green}"OK\n"${Color_Off} || printf ${Red}"FAIL\n"${Color_Off}