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src

correcting indent

May 1, 2023

817e3f2 · May 1, 2023

This branch is 13 commits ahead of, 224 commits behind broadinstitute/ABC-Enhancer-Gene-Prediction:main.

Name		Name	Last commit message	Last commit date
parent directory ..
EnhancersQNormRef.K562.txt		EnhancersQNormRef.K562.txt	update qnorm. other changes	Jul 4, 2019
compute_powerlaw_fit_from_hic.py		compute_powerlaw_fit_from_hic.py	add explanation for powerlawfit strategy	Jun 28, 2022
getVariantOverlap.py		getVariantOverlap.py	correcting indent	May 1, 2023
hic.py		hic.py	update support for bedpe files. Fix loading, file name convention and…	May 5, 2020
juicebox_dump.py		juicebox_dump.py	gzip hic files by default	Jan 15, 2020
makeAverageHiC.py		makeAverageHiC.py	hic updates	Nov 4, 2019
makeCandidateRegions.py		makeCandidateRegions.py	Variable name update for language: blacklist changed to blocklist, an…	Apr 18, 2021
make_bedgraph_from_HiC.py		make_bedgraph_from_HiC.py	choose hic better hic file	Aug 13, 2019
neighborhoods.py		neighborhoods.py	edited neighborhoods to work with example chr22	Apr 30, 2023
peaks.py		peaks.py	Variable name update for language: blacklist changed to blocklist, an…	Apr 18, 2021
predict.py		predict.py	fix test_variant_overlap to expressed target genes	Sep 22, 2022
predictor.py		predictor.py	cleanup	Jan 17, 2020
run.neighborhoods.py		run.neighborhoods.py	Make --H3K27ac an optional parameter. Allow running of ATAC only model	Apr 17, 2020
tools.py		tools.py	readme updates. clean up. add bedpe	Nov 8, 2019