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memory_usage.md

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Memory usages of the W4M tools

27/08/2018

qacct -o w4m -d 365 -j > /tmp/qacct-w4m
cat /tmp/qacct-w4m | grep -e maxvmem -e jobname | tr "\n" "|" | sed "s/jobname/\njobname/g" | sed -r "s/jobname +g[0-9]+_//" | sed -r "s/\|maxvmem/\t/" | sed -r "s/\|//" | grep "G$" | sort | less
Tools Total >4G >8G >10G >20G >100G maxmem
abims_CAMERA_annotateDiffreport 820 173 11 50 34 10 231.761G
abims_corr_analysis 200 3 0
abims_hclustering 66 1 0
abims_xcms_fillPeaks 1131 29 11 9 2 30.022G
abims_xcms_group 3778 15 6 3 1 20.364G
abims_xcms_retcor 1384 66 16 14 6 37.327G
abims_xcms_xcmsSet 31171 872 121 89 29 32.627G
bank_inhouse 619 1 0
Batch_correction 1094 2 2 1   19.855G
biosigner 276 1 0
checkFormat 928 1 0
generic_filter 2513 4 3 1  29.539G
Heatmap 348 12 5 3 3 28.510G
hr2 76 1 0
metams_runGC 427 5 3 2  2 40.425G
Multivariate 4682 7 7 2  2 31.113G
NmrAnnotation 24 1 1
NmrBucketing 161 1 1
NmrNormalization 21 1 1
NMR_Read 308 1 1
profia 20 12 12 12  1 28.717G
Probmetab 39 3 1
quality_metrics 1928 6 2 2  1 29.568G
Univariate 1869 6 6 3   19.832G
wsdl_chemspider 71 64 64 64  64 35.547G
wsdl_kegg 158 132 132 132  132   35.606G
wsdl_massbank 88 75 75 74  132   35.545G