Ingest CCF 2D Reference Functional Tissue Unit (FTU) Library ASCT+B 2D FTU mappings into UBKG

[AlanSimmons]

FYI @lchoy

Request

Ingest (ASCTB 2D FTU mappings)[https://hubmapconsortium.github.io/ccf-releases/v1.2/docs/2d-ftu/asctb-2d-ftu-mapping.html].

Based on a review of CSV downloaded from (this page)[https://hubmapconsortium.github.io/ccf-releases/v1.2/docs/2d-ftu/asctb-2d-ftu-mapping.html], this involves mapping FTUs to sets of CL or UBERON codes.

e.g.,

anatomical_structure_of	source_spatial_entity	node_name	label	OntologyID
#FTUAlveolus	#2DRefObjects	Type_1_Pneumocyte_1	type I pneumocyte	CL:0002062
#FTUAlveolus	#2DRefObjects	Type_1_Pneumocyte_2	type I pneumocyte	CL:0002062
#FTUAlveolus	#2DRefObjects	Type_1_Pneumocyte_3	type I pneumocyte	CL:0002062
#FTUAlveolus	#2DRefObjects	Type_1_Pneumocyte_4	type I pneumocyte	CL:0002062
#FTUAlveolus	#2DRefObjects	Type_1_Pneumocyte_5	type I pneumocyte	CL:0002062
#FTUAlveolus	#2DRefObjects	Type_1_Pneumocyte_6	type I pneumocyte	CL:0002062
#FTUAlveolus	#2DRefObjects	Type_1_Pneumocyte_7	type I pneumocyte	CL:0002062
#FTUAlveolus	#2DRefObjects	Type_1_Pneumocyte_8	type I pneumocyte	CL:0002062
...

[bherr2]

MC-IU is in the process of ontologizing all FTUs and their crosswalk for the December release of the HRA. An in process version of the data as we have parsed it is here: https://github.com/hubmapconsortium/hra-ui/blob/develop/apps/ftu-ui/src/assets/TEMP/2d-ftu-illustrations.jsonld (note some structure subject to change, but pretty close). Once we get it in the HRA-KG we can add exports to the hra-ubkg-export project to extract relationships for UBGK if that's desired.

[AlanSimmons]

Thanks, @bherr2. I'm not sure at this point what's needed. Lisa and Nick mentioned that the UI would need FTU information for something that they are working on, and I built this issue to track the request.