Compilation error

[byoo]

Can you help with the installation issue below? I tried R 4.0.3 and R 4.1.0 without success. Thanks!

✔  checking for file ‘/tmp/RtmpGeWbBu/remotes26b536a8a2737/xihaoli-STAAR-7887209/DESCRIPTION’ (573ms)
─  preparing ‘STAAR’:
✔  checking DESCRIPTION meta-information
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building ‘STAAR_0.9.6.tar.gz’

* installing *source* package ‘STAAR’ ...
...

g++ -std=gnu++11 -I"/software/R/R-4.0.3/lib64/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/software/R/R-4.0.3/lib64/R/library/Rcpp/include' -I'/software/R/R-4.0.3/lib64/R/library/RcppArmadillo/include' -I/usr/local/include   -fpic  -g -O2  -c CCT_pval.cpp -o CCT_pval.o
CCT_pval.cpp: In function ‘double CCT_pval(arma::vec, arma::vec)’:
CCT_pval.cpp:28:42: error: ‘PI’ was not declared in this scope
   28 |    cct_stat = cct_stat + weights(k)/x(k)/PI;
      |                                          ^~
CCT_pval.cpp:31:52: error: ‘PI’ was not declared in this scope
   31 |    cct_stat = cct_stat + weights(k)*tan((0.5-x(k))*PI);
      |                                                    ^~
CCT_pval.cpp:37:29: error: ‘PI’ was not declared in this scope
   37 |         pval = (1/cct_stat)/PI;
      |                             ^~
make: *** [/software/R/R-4.0.3/lib64/R/etc/Makeconf:181: CCT_pval.o] Error 1
ERROR: compilation failed for package ‘STAAR’

[xihaoli]

Hi byoo,

Thank you for letting me know. Upon checking your error message, it seems that the issue comes from the newly updated Rcpp package (RcppCore/Rcpp#1158) for undeclared math constant PI (3.1415926…) in C++ functions.

Could you please send me an email to have a further discussion?

Best,
Xihao