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I have find the in the webpage https://usher-wiki.readthedocs.io/en/latest/matUtils.html, it has -Mfunction, but when I typematUtils extract`, can not find this function:
matUtils extract -i input.pb -a 5 -M my_metadata_1.tsv,my_metadata_2.tsv -k my_sample:25 -j my_sample_context.json
The text was updated successfully, but these errors were encountered:
extract options:
-i [ --input-mat ] arg Input mutation-annotated tree file
[REQUIRED]
-g [ --input-gtf ] arg Input GTF annotations file (only used
with --taxodium)
-f [ --input-fasta ] arg Input FASTA reference file (only used
with --taxodium)
-s [ --samples ] arg Select samples by explicitly naming
them. One per line -M [ --metadata ] arg Comma-delineated paths to metadata
tsv/csvs containing categorical
metadata values for a json or taxodium
output. Used with -j and -l only
-c [ --clade ] arg Select samples by membership in at
least one of the indicated clade(s),
comma delimited.
...
Dear @yatisht,
I have find the in the webpage
https://usher-wiki.readthedocs.io/en/latest/matUtils.html
, it has -Mfunction, but when I type
matUtils extract`, can not find this function:matUtils extract -i input.pb -a 5 -M my_metadata_1.tsv,my_metadata_2.tsv -k my_sample:25 -j my_sample_context.json
The text was updated successfully, but these errors were encountered: