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predict_dtox.sh
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module add python/3.7
python src/predict_dtox.py /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_25_ps_5_re_0_st_0_root.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_25_ps_5_re_0_st_0_knowledge_by_node.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_25_ps_5_re_0_st_0_node_size.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_25_ps_5_re_0_st_0_layer.tsv 5 20 data/compound_target_probability_tox21_implementation/rt-viability-hepg2-p1/compound_target_fingerprint_maccs_probability_tox21-rt-viability-hepg2-p1_whole_data.tsv_rt_25_ps_5_re_0_xs_20_al_0.5_ld_0.0001_model.pt /home/yunhao1/project/TTox/data/compound_target_0.25_binary_feature_select_implementation/fingerprint_maccs_dsstox_pred/fingerprint_maccs_select_features_mc_0.85_dsstox_compounds_binding_affinity_prediction_select_features_probability.tsv data/compound_target_probability_tox21_prediction/rt-viability-hepg2-p1/dsstox_compound_target_fingerprint_maccs_probability_tox21-rt-viability-hepg2-p1_whole_data.tsv_rt_25_ps_5_re_0_xs_20_al_0.5_ld_0.0001_model_pred.tsv
python src/predict_dtox.py /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_14_ps_5_re_0_st_0_root.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_14_ps_5_re_0_st_0_knowledge_by_node.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_14_ps_5_re_0_st_0_node_size.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_14_ps_5_re_0_st_0_layer.tsv 5 20 data/compound_target_probability_tox21_implementation/rt-viability-hek293-p1/compound_target_fingerprint_maccs_probability_tox21-rt-viability-hek293-p1_whole_data.tsv_rt_14_ps_5_re_0_xs_20_al_0.5_ld_0.0001_model.pt /home/yunhao1/project/TTox/data/compound_target_0.25_binary_feature_select_implementation/fingerprint_maccs_dsstox_pred/fingerprint_maccs_select_features_mc_0.85_dsstox_compounds_binding_affinity_prediction_select_features_probability.tsv data/compound_target_probability_tox21_prediction/rt-viability-hek293-p1/dsstox_compound_target_fingerprint_maccs_probability_tox21-rt-viability-hek293-p1_whole_data.tsv_rt_14_ps_5_re_0_xs_20_al_0.5_ld_0.0001_model_pred.tsv
python src/predict_dtox.py /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_25_ps_5_re_0_st_0_root.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_25_ps_5_re_0_st_0_knowledge_by_node.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_25_ps_5_re_0_st_0_node_size.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_25_ps_5_re_0_st_0_layer.tsv 5 20 data/compound_target_probability_tox21_implementation/rt-viability-hepg2-p1/compound_target_fingerprint_maccs_probability_tox21-rt-viability-hepg2-p1_whole_data.tsv_rt_25_ps_5_re_0_xs_20_al_0.5_ld_0.0001_model.pt /home/yunhao1/project/TTox/data/compound_target_0.25_binary_feature_select_implementation/fingerprint_maccs_tox21_pred/fingerprint_maccs_select_features_mc_0.85_tox21_compounds_binding_affinity_prediction_select_features_probability.tsv data/compound_target_probability_tox21_prediction/rt-viability-hepg2-p1/tox21_compound_target_fingerprint_maccs_probability_tox21-rt-viability-hepg2-p1_whole_data.tsv_rt_25_ps_5_re_0_xs_20_al_0.5_ld_0.0001_model_pred.tsv
python src/predict_dtox.py /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_14_ps_5_re_0_st_0_root.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_14_ps_5_re_0_st_0_knowledge_by_node.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_14_ps_5_re_0_st_0_node_size.tsv /home/yunhao1/project/ontology/data/reactome/hierarchy/rt_14_ps_5_re_0_st_0_layer.tsv 5 20 data/compound_target_probability_tox21_implementation/rt-viability-hek293-p1/compound_target_fingerprint_maccs_probability_tox21-rt-viability-hek293-p1_whole_data.tsv_rt_14_ps_5_re_0_xs_20_al_0.5_ld_0.0001_model.pt /home/yunhao1/project/TTox/data/compound_target_0.25_binary_feature_select_implementation/fingerprint_maccs_tox21_pred/fingerprint_maccs_select_features_mc_0.85_tox21_compounds_binding_affinity_prediction_select_features_probability.tsv data/compound_target_probability_tox21_prediction/rt-viability-hek293-p1/tox21_compound_target_fingerprint_maccs_probability_tox21-rt-viability-hek293-p1_whole_data.tsv_rt_14_ps_5_re_0_xs_20_al_0.5_ld_0.0001_model_pred.tsv