Here is the repository for the following scripts:
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Segmentation and quantification of overnight recordings of single male calling: spectral and temporal characterization
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Filtering and Genotyping of extremely low coverage (.01x) wgs samples across candidate, species-specific nucleotide variants identified from >10x coverage dataset of X.laevis and X.petersii and F1 hybrids.
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Pruning any variants where there is no read coverage across all samples.
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Imputating missing genotypes across candidate variants
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Pruning of variants using population-based allele frequences
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Reformatting calls for rQTL
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Automated video and audio recording (loop every hour) for Raspberry pi cameras for female phonotaxis experiment.
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Convolutional Neural Network for separating female and male tracking behavior