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Error during constructing the spatial network #10
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Hi. Your platform is Visium or stereo-seq? Please set |
Batch_list = []
|
I have already set the rad_cutoff parameter to 150, but there is 0 edge still |
You can increase |
How exactly this parameter rad_cutoff should be set appropriately?My data is from the same tumour but from different samples, not adjacent slices, the parameter is set small and the calculated edges are 0 edges |
I finally successfully installed the STAligner package and I can follow the pipeline in the tutorial file. However, I encountered the error when I run this procedure: STAligner.Cal_Spatial_Net
I got similar feedback for each sample as follows:
0.000 neighbors per cell on average
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