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CNVpytor

GC correction

bin size: 500

type region size level e-value 1 e-value 2 e-value 3 e-value 4 q0 pN dG
duplication chr15:22361501-22491500 130000 2.2389 0.00E+00 4.64E-39 0.00E+00 2.52E-38 0.7354 0 3400
duplication chr15:22505501-22617000 111500 1.9894 0.00E+00 2.94E-32 0.00E+00 1.60E-31 0.7345 0 147400
duplication chr15:22662501-22755000 92500 1.9168 0.00E+00 2.84E-25 0.00E+00 1.54E-24 0.8499 0 304400
deletion chr15:22892501-22928000 35500 0.6953 2.50E-01 1.16E-02 1.24E+00 5.09E-02 0.4846 0 299000
duplication chr15:23128501-23221000 92500 2.3988 0.00E+00 7.43E-32 0.00E+00 5.61E-31 0.9975 0 6000
deletion chr15:23221001-23279000 58000 0.0358 0.00E+00 1.60E-23 0.00E+00 1.70E-28 1 0.8621 0
duplication chr15:23279001-23371500 92500 2.3077 0.00E+00 2.84E-25 0.00E+00 1.54E-24 0.6364 0 2300
duplication chr15:28249001-28415000 166000 1.6047 0.00E+00 2.71E-52 0.00E+00 1.47E-51 0.9054 0 4972300
duplication chr15:28432501-28711500 279000 2.0108 0.00E+00 7.78E-94 0.00E+00 4.23E-93 0.9139 0 5155800
duplication chr15:28735501-28846000 110500 1.9071 0.00E+00 6.85E-32 0.00E+00 3.72E-31 0.7189 0 5458800
duplication chr15:30086001-30508000 422000 2.1025 0.00E+00 2.09E-146 0.00E+00 1.14E-145 0.8262 0 6809300
duplication chr15:30517501-30728500 211000 2.0031 0.00E+00 7.75E-69 0.00E+00 4.21E-68 0.6453 0 7240800
duplication chr15:31648501-31725500 77000 1.7678 0.00E+00 1.82E-24 0.00E+00 1.32E-23 0.8812 0 8371800
duplication chr15:32157501-32602500 445000 2.047 0.00E+00 7.33E-155 0.00E+00 3.99E-154 0.7135 0 8880800

bin size: 1000

type region size level e-value 1 e-value 2 e-value 3 e-value 4 q0 pN dG
duplication chr15:30086001-30508000 422000 2.1025 0.00E+00 2.09E-146 0.00E+00 1.14E-145 0.8262 0 6809300
duplication chr15:30517501-30728500 211000 2.0031 0.00E+00 7.75E-69 0.00E+00 4.21E-68 0.6453 0 7240800
duplication chr15:31648501-31725500 77000 1.7678 0.00E+00 1.82E-24 0.00E+00 1.32E-23 0.8812 0 8371800
duplication chr15:32157501-32602500 445000 2.047 0.00E+00 7.33E-155 0.00E+00 3.99E-154 0.7135 0 8880800

bin size: 10000

type region size level e-value 1 e-value 2 e-value 3 e-value 4 q0 pN dG
duplication chr15:22360001-23220000 860000 2.3851 0.00E+00 1.73E-01 0.00E+00 1.73E-01 0.7616 0 1900
duplication chr15:23280001-31780000 8500000 1.8028 0.00E+00 1.99E-91 0.00E+00 1.99E-91 0.464 0 3300
duplication chr15:31790001-32630000 840000 2.4294 0.00E+00 2.81E-03 0.00E+00 2.81E-03 0.7289 0 8513300

No GC correction

bin size: 500

type region size level e-value 1 e-value 2 e-value 3 e-value 4 q0 pN dG
duplication chr15:22388501-22491500 103000 2.331 0.00E+00 4.28E-29 0.00E+00 2.32E-28 0.7373 0 30400
duplication chr15:22505501-22704500 199000 1.7708 0.00E+00 2.37E-64 0.00E+00 1.29E-63 0.761 0 147400
duplication chr15:22716501-22772000 55500 1.7048 2.90E-08 1.19E-11 4.35E-07 6.46E-11 0.8497 0 358400
deletion chr15:22892501-22928000 35500 0.6676 1.63E-02 4.72E-03 1.06E-01 2.18E-02 0.4846 0 299000
duplication chr15:23128001-23221000 93000 2.3425 0.00E+00 1.65E-32 0.00E+00 1.27E-31 0.9975 0 6000
deletion chr15:23221001-23281000 60000 0.0668 0.00E+00 2.53E-20 0.00E+00 2.36E-19 1 0.8333 0
duplication chr15:23281001-23356500 75500 2.4653 0.00E+00 9.48E-25 0.00E+00 7.31E-24 0.6572 0 4300
duplication chr15:28323501-28415000 91500 1.8748 0.00E+00 7.15E-25 0.00E+00 3.88E-24 0.9681 0 5046800
duplication chr15:28432501-28706500 274000 1.9721 0.00E+00 6.77E-92 0.00E+00 3.68E-91 0.9187 0 5155800
duplication chr15:28735501-28777500 42000 2.2094 0.00E+00 1.08E-06 2.39E-11 5.86E-06 0.8605 0 5458800
duplication chr15:28790001-28846000 56000 1.7807 7.29E-10 4.21E-16 6.85E-09 3.25E-15 0.5649 0 5513300
deletion chr15:29554501-29567500 13000 0.2664 2.44E-06 9.20E+01 2.23E-06 9.44E+01 0.7368 0 6277800
duplication chr15:30113501-30211000 97500 2.3298 0.00E+00 4.48E-27 0.00E+00 2.43E-26 0.7801 0 6836800
duplication chr15:30212001-30305000 93000 1.9309 0.00E+00 2.01E-25 0.00E+00 1.09E-24 0.9117 0 6935300
duplication chr15:30318001-30633500 315500 2.1998 0.00E+00 3.89E-107 0.00E+00 2.11E-106 0.7883 0 7041300
duplication chr15:30682501-30728500 46000 1.934 9.77E-10 3.67E-08 1.35E-08 1.99E-07 0.4734 0 7405800
deletion chr15:30969501-30994500 25000 0.5834 1.37E-03 2.42E-01 2.48E-03 1.55E+00 0.1875 0 7692800
duplication chr15:31644001-31727000 83000 1.6891 0.00E+00 4.48E-28 0.00E+00 3.45E-27 0.8635 0 8367300
duplication chr15:32151501-32222500 71000 1.7743 7.63E-11 2.42E-17 1.02E-10 1.31E-16 0.8842 0 8874800
duplication chr15:32233501-32623500 390000 2.0259 0.00E+00 1.70E-134 0.00E+00 9.20E-134 0.6991 0 8956800

bin size: 1000

type region size level e-value 1 e-value 2 e-value 3 e-value 4 q0 pN dG
duplication chr15:22187001-22254000 67000 1.6623 2.16E-02 1.33E+04 7.44E-02 1.92E+04 0.7007 0 54400
deletion chr15:22307001-22362000 55000 0.062 0.00E+00 1.98E+04 0.00E+00 6.33E-12 1 0.9091 0
duplication chr15:22362001-23221000 859000 3.1276 0.00E+00 1.20E-59 0.00E+00 1.73E-59 0.7621 0 3900
deletion chr15:23221001-23283000 62000 0.2505 2.64E-06 2.30E+09 1.06E-10 1.56E+09 0.9512 0.8065 0
duplication chr15:23283001-27651000 4368000 2.1064 0.00E+00 0.00E+00 0.00E+00 0.00E+00 0.2098 0 6300
duplication chr15:27673001-27751000 78000 2.0447 1.52E-06 1.77E+03 5.84E-06 2.56E+03 0 0 4396300
duplication chr15:27772001-33422000 5650000 2.5407 0.00E+00 0.00E+00 0.00E+00 0.00E+00 0.6748 0 4495300
duplication chr15:33441001-34426000 985000 1.4215 0.00E+00 1.12E-69 0.00E+00 1.62E-69 0.0557 0 10164300
duplication chr15:34502001-35506000 1004000 1.4247 0.00E+00 3.44E-71 0.00E+00 4.97E-71 0.0331 0 11225300

bin size: 10000

type region size level e-value 1 e-value 2 e-value 3 e-value 4 q0 pN dG
duplication chr15:22360001-23220000 860000 2.3433 0.00E+00 1.95E+00 0.00E+00 1.95E+00 0.7616 0 1900
duplication chr15:23280001-27520000 4240000 1.5835 0.00E+00 2.36E-69 0.00E+00 2.36E-69 0.2168 0 3300
duplication chr15:27540001-29410000 1870000 1.9103 0.00E+00 3.33E-11 0.00E+00 3.33E-11 0.6288 0 4263300
duplication chr15:29420001-31430000 2010000 2.0482 0.00E+00 1.07E-12 0.00E+00 1.07E-12 0.6829 0 6143300
duplication chr15:31440001-32630000 1190000 2.2088 0.00E+00 1.27E-06 0.00E+00 1.27E-06 0.7327 0 8163300

cnvpytor -root file.pytor -his 500 1000 10000 cnvpytor -root file.pytor -partition 500 1000 10000 cnvpytor -root nogc.pytor -nogc -partition 500 1000 10000