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We use nodejs path module to resolve relative paths, and it doesn't support ~(~ is not a unix standard, It's just used by bash originated shells). Take a look at these two issues in nodejs nodejs/node-v0.x-archive#2857nodejs/node#684. If someone can add this to mup using a third party library, pull requests are welcome.
PS: Mup works with relative paths like ../../yourkey fine.
I had to change this from:
pem: '~/.ssh/id_rsa'
pem: '/Users/Patrick_/.ssh/id_rsa'
because of this result: open '/Users/Patrick_/app/~/.ssh/id_rsa'
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