config.yml

# names of all samples and paths to their count matrices
data:
  Rat_Amygdala_787A_all_seq:
    counts: data/snRNA/Rat_Amygdala_787A_all_seq/outs/filtered_feature_bc_matrix/matrix.mtx.gz
  Rat_Opioid_HS_1_premrna:
    counts: data/snRNA/Rat_Opioid_HS_1_premrna/outs/filtered_feature_bc_matrix/matrix.mtx.gz
  Rat_Opioid_HS_2_premrna:
    counts: data/snRNA/Rat_Opioid_HS_2_premrna/outs/filtered_feature_bc_matrix/matrix.mtx.gz
  Rat_Opioid_HS_3_premrna:
    counts: data/snRNA/Rat_Opioid_HS_3_premrna/outs/filtered_feature_bc_matrix/matrix.mtx.gz
  Rat_Opioid_HS_4_premrna:
    counts: data/snRNA/Rat_Opioid_HS_4_premrna/outs/filtered_feature_bc_matrix/matrix.mtx.gz

# name of sample(s) to use for NB parameter estimation
sample: Rat_Amygdala_787A_all_seq

# simulation parameters
params:
  replicates: [1,3,5,7,10]
  cells: 5000
  effects: [1.25, 1.5, 1.75, 2]
  alpha: 0.05
  nGenes: 10000
  pctDegs: 0.05
  nSims: 15
  test: wilcox
  sample_variable: replicates

# path to directory to save output files
out: out