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Quantifying "unmapped" reads #19

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joycekang opened this issue Jul 29, 2021 · 0 comments
Open

Quantifying "unmapped" reads #19

joycekang opened this issue Jul 29, 2021 · 0 comments

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@joycekang
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Hello! Thanks for making such a great tool.

I was wondering if it is possible to add the unmapped reads from the bam file in the quantification step? I see that currently it is an option for the genotyping step but not the quantification step. Thanks!
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@joycekang