Merge pull request #204 from GeorgianaElena/jupyterlab3

Upgrade to JupyterLab 3.0

hub-templates/basehub/values.yaml

@@ -104,7 +104,7 @@ jupyterhub:
       hub.jupyter.org/node-purpose: user
     image:
       name: set_automatically_by_automation
-      tag: 524cf58
+      tag: 0d5aa48
     storage:
       type: static
       static:

images/user/Dockerfile

@@ -120,12 +120,9 @@ RUN sed -i -e '/^R_LIBS_USER=/s/^/#/' /etc/R/Renviron && \
 
 USER ${NB_USER}
 
-COPY environment.yml /tmp/
+COPY requirements.txt /tmp/
 
-RUN conda env update -p ${CONDA_DIR} -f /tmp/environment.yml
-
-COPY install-jupyter-extensions.bash /tmp/install-jupyter-extensions.bash
-RUN /tmp/install-jupyter-extensions.bash
+RUN python3 -m pip install -r /tmp/requirements.txt
 
 # Set CRAN mirror to rspm before we install anything
 COPY Rprofile.site /usr/lib/R/etc/Rprofile.site

images/user/requirements.txt

@@ -0,0 +1,42 @@
+numpy
+scipy
+matplotlib
+pandas
+seaborn
+sympy
+networkx
+scikit-learn
+beautifulsoup4
+statsmodels
+nltk
+spacy
+geopandas
+# From https://github.com/utoronto-2i2c/jupyterhub-deploy/issues/29
+astroquery
+astropy
+galpy
+catalystcoop.pudl
+dask==2020.12.0
+distributed==2020.12.0
+dask-gateway==0.9.0
+# Infrastructure things
+jupyterlab==3.*
+voila==0.2.6
+nbgitpuller==0.9.*
+jupyter-resource-usage==0.5.0
+RISE==5.7.1
+jupyter_contrib_nbextensions==0.5.1
+notebook==6.1.4
+jupyterhub==1.3.0
+jupyter-rsession-proxy==1.2
+jupyter-tree-download==1.0.1
+ipywidgets==7.5.1
+otter-grader==2.1.7
+datascience
+geojson
+folium
+geopy
+# JupyterLab extensions
+jupyterlab_widgets==1.0.*
+jupytext==1.10.*
+jupyter-server-proxy==3.0.2