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Add textblob & bump to jupyterhub 3.0 #31
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This doesn't actually block upgrading to z2jh, as jupyterhub is already >1.5.0 on this |
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It looks like the building images workflow is killed again because of OOM 😕
The exit code of last process:
The command '/bin/sh -c conda env update -p ${CONDA_DIR} -f /tmp/environment.yml && conda clean -afy' returned a non-zero code: 137
Yeah, I'll switch this over to mamba. |
Dockerfile
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@@ -112,8 +112,8 @@ RUN apt-get update -qq --yes && \ | |||
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WORKDIR /home/jovyan | |||
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COPY install-miniforge.bash /tmp/install-miniforge.bash | |||
RUN /tmp/install-miniforge.bash | |||
COPY install-mambaforge.bash /tmp/install-mambaforge.bash |
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Lovely 😉.
Check succeeded, but bio R package installs are still failing :D I'll take another look soon |
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Also install an old enough version of locfit so edgeR installs
I got these by looking at the current running versions on the hub. This makes sure users don't accidentally see version changes
All fixed! |
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Yaaaaaaaaaaaaay 🚀 LGTM 🚀
- statsmodels==0.13.* | ||
- nltk==3.6.* | ||
- spacy==3.2.* | ||
- geopandas==0.10.* |
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I love all these pins!
busting the general R cache each time we need to fiddle with
bioconductor
install edgeR
again
Fixes #33