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added namespace to tables
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strambc committed Sep 13, 2024
1 parent 0290d68 commit e62d384
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2 changes: 2 additions & 0 deletions docs/source/bio.rst
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Expand Up @@ -7,6 +7,8 @@ Requirement level: optional

Recommended: **Yes**

Namespace: *4dn_FOF-CT_bio*

Summary
-------
This table is highly recommended and it is designed to store and share
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2 changes: 2 additions & 0 deletions docs/source/cell.rst
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Expand Up @@ -7,6 +7,8 @@ Requirement level: optional

Recommended: **Yes**

Namespace: *4dn_FOF-CT_cell*

Summary
-------
This table is optionally used to document properties that are globally associated with individual Cells (e.g., cell size, cell volume, cell type) identified as part of this experiment.
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1 change: 1 addition & 0 deletions docs/source/core.rst
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Expand Up @@ -4,6 +4,7 @@ DNA-Spot/Trace Data core table
==============================

Requirement level: **required**
Namespace: *4dn_FOF-CT_core*

Summary
-------
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2 changes: 2 additions & 0 deletions docs/source/demultiplexing.rst
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Expand Up @@ -7,6 +7,8 @@ Requirement level: optional

Recommended: **Yes**

Namespace: *4dn_FOF-CT_demultiplexing*

Summary
-------
This table is optional and is designed to be used in the case of multiplexed FISH experiments (i.e., MERFISH) in which the final localization of a bright DNA or RNA Spot results from the combination of multiple individual localization events (e.g., by combining particles detected and localized in separate images).
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2 changes: 2 additions & 0 deletions docs/source/extracell.rst
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Expand Up @@ -7,6 +7,8 @@ Requirement level: optional

Recommended: **Yes**

Namespace: *4dn_FOF-CT_extracell*

Summary
-------
This table is optionally used to document properties (i.e., volume, mean fluorescence intensity) that are globally associated with individual extracellular structures (e.g., Tissue, Organoid, etc.) Regions of Interest (ROI) identified as part of this experiment.
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2 changes: 2 additions & 0 deletions docs/source/mapping.rst
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Expand Up @@ -5,6 +5,8 @@ Cell/ROI Mapping table

Requirement level: *conditionally required*

Namespace: *4dn_FOF-CT_mapping*

Summary
-------
This table is used to provide the boundaries of Cells and other ROIs
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2 changes: 2 additions & 0 deletions docs/source/quality.rst
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Expand Up @@ -7,6 +7,8 @@ Requirement level: optional

Recommended: **Yes**

Namespace: *4dn_FOF-CT_quality*

Summary
-------
This table is highly recommended and it is designed to provide quality
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2 changes: 2 additions & 0 deletions docs/source/rna_bio.rst
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Expand Up @@ -7,6 +7,8 @@ Requirement level: optional

Recommended: **Yes**

Namespace: *4dn_FOF-CT_rna_bio*

Summary
-------
This table is highly recommended and it is designed to store and share
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2 changes: 2 additions & 0 deletions docs/source/rna_quality.rst
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Expand Up @@ -7,6 +7,8 @@ Requirement level: optional

Recommended: **Yes**

Namespace: *4dn_FOF-CT_rna_quality*

Summary
-------
This table is highly recommended and it is designed to provide quality
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2 changes: 2 additions & 0 deletions docs/source/subcell.rst
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Expand Up @@ -7,6 +7,8 @@ Requirement level: optional

Recommended: **Yes**

Namespace: *4dn_FOF-CT_subcell**

Summary
-------
This table is optionally used to document properties that are globally associated with individual sub-cellular ROIs that typically correspond to sub-nuclear features (e.g., Nucleoli, Nuclear Lamina, Chromosome Domains, PML bodies, etc.) identified as part of this experiment.
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2 changes: 2 additions & 0 deletions docs/source/trace.rst
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Expand Up @@ -7,6 +7,8 @@ Requirement level: optional

Recommended: **Yes**

Namespace: *4dn_FOF-CT_trace*

Summary
-------
This table is optionally used to document properties that are globally associated with individual Traces rather than individual bright Spots (e.g., Physical coordinates, RNA transcription, or Allele). These are properties that are shared by all bright Spots that constitute a Trace.
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